MmuINT0180037 @ mm10
Intron Retention
Gene
ENSMUSG00000031907 | Zfp90
Description
zinc finger protein 90 [Source:MGI Symbol;Acc:MGI:104786]
Coordinates
chr8:106415327-106419197:+
Coord C1 exon
chr8:106415327-106415770
Coord A exon
chr8:106415771-106419070
Coord C2 exon
chr8:106419071-106419197
Length
3300 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCAGGGCTGTGATCCCACAGGAG
3' ss Score
5.43
Exon sequences
Seq C1 exon
GCAGTCGCACTCGTGGCTCTGCGCCCGCCGCTGTGGCCATTGTCCGACCCTGTTGTTGCAGAGCAGTACTGCCGGGAACAAGAAACTGCAGCGGGCGCTAGAGGGGCGGACCTGAGGTCGCGGATTCCGAAGCCCCGGAGGCAGATTCCGAGTGCAGTGGGTAGGAGGCTGTCCTCCGGGCCTCGCCGACCATCCTGCGGACGGACTGGGCGTGGCCGGAGGAACTGTCCCGAAGCTGTGGGGCCTTTCATTTGGCCTTGGGAAGAGCAGCAGGAGAAGGCGGGGCTCCTCCCCACGTTTCGGCCGAAGTGGCTGCAGAGCTGAAGGGGTGGGGCCTCGGGGTAGCCCGGTGAGTGGATCCTGTCCTCTCTCCTCAGCCCTGGACCATAGCCAGCACACACTGAGGCAGGAATGGCCCCGAGACCTCCGACGGCCAAGCCCCAG
Seq A exon
GTGAGCCGAGCCTTCCCCCACCGCCCGGAGCATCCCACCCTGAGAGGCCCCCGGAGTCTGTATGGAACAGTTATTGGTATAGGTATAGAGAGTCTTAGTTTGGATCGCTTTGAGTCTCCTCCTCTGGAGAAAACCCCTCCCAAAGTGCCCAGCCCTGGGCAGAGCAGGATTTCTGAAAGGATGGAGTTAAAGAGGAGACTAGGGAAGTGCGATCTTGTGAGAGGAAGTGTTCTGGGGGTGTCAGCACTGAGACTTTATTGCAGTGTGCACTTCTTAGAACTCTTCAGTGAGGAATGGAGGATAGAGGGACAAAATAGAAAAGCCCCCTGCTTCCCATCCAAAGGCCATAAAGAGATAGTAGGGGGGCAGAAGAGACCTATTAGAATAAGAGGCCGGTGAAGGTTGGGCGCTGAGTCGGAGACCACCATTACAGCCAAACCTGGTCAGACAAGCTCCAGCTTTTCTTGCCCCCCCCCCCGCCCCACTCGTTTTATTTTCCTTTCTTTCTTTCCCCATTAACAAATGTATAATAGTGCGCACCCTCCATAGCCCCGGCTTCAGGTTAATTAGTAAGAGACAGATTTATCAACCCACTTTTTAGTTGTAGCAAAAGGGGCATTTTCTGGACATAAGCTCTGAGGCTGTCCGTTTTACTTTGATGAGAACATAATCTGAACTCTCTTTGGAGTTGAAGGTAAGAACTAGGACTATAGCTCAGTGGTAGATCACTTGCCTAGTATGTGTGAGGTCCTAGGTTCAATTCCCAGCACCTCCTGGAAAATGATAAGGATGGGCTGGAGAGATGGCGCTCCAGTTAAGAGCACACACTGTAAGCTTTTACACGCTGCTCTTGCAGAATTAGTTTCGTTCCTAGTACTCACGGCAGGAAGTACACATCCACCTTGTAATACAGGTTAAAGGGGACCTGATGGCTCTGGCTTCTTGGATACCTGCTCTCACAGGAACAAAATTGTTAGAAACGGGGGAAAAAAATCTCAGCTCAAGGCATTGAGGAAGAAAGGATCGCACAGAGTTGAAAGAAGCCTAGCAGGGCTCTGAACTCTTGTAAAAATGGTCCAACTGAACCAAAACTGAGCTAAAAACCACAGTTTGCCAGGGTGACTTCCGTCTTTTCTCCCTCACAGAGGTGGTGACTGAAACTCATCCCGTTAATTGAAGCTTGATCCTATAATCTGACACGATTGGCTAATTGTTGCAAAGGGGAAGGCTTGGGGAATATAATATGGGCCTTTATAAGGCTATTTTCGTGAGGGGAAAAAGGGTTTGCACAATACCCACAGAGAGACCCATAATATAACAAAATACTTTTAACAGTAAGCTACAAGTTGTAGTTGCTACAGGTATCATATAATCAAGTTCAATCTAGATAAAAATACTAACAGTATCTTTTAAGGTCAGTTTATAGAGTCCAAAAATGTAGCACAGTCAGTTGCTATGTATATCATATAATCAAGTTCAATCTAGTTAAAAATACTAACAGTGTCTTTTAAGGTCAGTTTATAGGGTCCAAAAATGTAGGGCAGTCAGTAGAGTCGCTGCCTAGAGTGCAGGGAACCCTGGGTTTACATCCCTTCATGAACTGCACACAGCCTGGGGAGAACTAGAGAAGTCACCCTTGGGAAAGAACATTGATCGAGGTCTAGAACAGTGGCTAGGAGTATTTTCTGTAGAGCTGAGGGAAGGCCATGCACTGTGGTGAGGATGTGCAAAGCAAAAGGATGCAAAAGAGAGACAAGTTAATAAGGCAAGGAGTCCATGTGACAGGAACCGAACTGCCGCCTTCTGCCTTTTGTGGATCAGCAAGTTGCTGCCTGGTTGTGTTGTTTGCAAAGACCCACACAGGTGATGATGATGGTGATGGTGGTGATGATGATGATGATGATGTTCTAGATTATTTTAGACCTCTACCTCCTGCTATTCTTTCCAGGCAACTGAATCACCTTCTCTTTAAACTTTGCTTCCTATCCTATGCCCTGTGCTTCTGTCTAATGGGAAAAAAAAAATCAAATTGTAGAGCTAGAGATGGCCTCAGCTGATACAATGCTTACCTAGCATGAGCCAAGCCCTGGCTTCCCTCCCAGTGCCACAGACACCAGATGTTGTGGTGCGCGCCTGTAATCCTGCTGTTGGGAAGTAGAACCAGAAAGATCGGAGGTTCAACCTCGACCACATAGTGTGCTGGAGATCAGCCTGGGATACACGAGAACCTGTCTTAATAATTATAAATGGGGCTAGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCTGAAGGACCTAAGTTCAAATCCCAGCTACCATGTGGTGGCTCACAACCATCCGTAATAAAATCTGATGCCCTCTTCTGGGGTGTCTGAAGACACTACAGTGTATTTACATATAAGAAAGAAAGGAAGGAAGGAAGGAAAGGGAAAGGGAAAAGAGGGAAAAAGGGAAAAGGGAAAGGAAAAGGAAAGAGAAAAGGTTGAGAGTACTGACTGCTCTTGCAGAAGACCCAGGTCCATTTTCCAAAACCCACAGAGTGGCTCACAACTGCCTGTAACACAGCTCCAGGGGATCTGATGTGTTCTCCTGACCCTCATGGGTTCCCGCATGAACACAACGCACACACATACCCTCAGATACACACACATAAATGAATGAGCAGATATTTTTAAACATTAGTGAATACATAAAAAGCAATTTGTAGATCAATGTGTGTAATGGTTCATAAAGCATGCGTGTAGAACGTGTGTAAAACATGGACAGGGAGCTCCTAGGTATGTACACCAACGGTTGGGAATGATTATTGGGAGAATATATGGGGATAGGAAGGCTTGGTGATGGTGGTGTTCGCCTTTAGTCTCAGCACTCGGGAGGCAGAGGTAGCTGGAGTTCTGTGAGTTTGGAGCCAGCCTGGTTCAAGAGCGAGTTCTAGGATGGCTAAGGCTGTAACGGTGAAAGAGAACGGGAGCTGTGATCTGTGCAGGACAGTGTAGGCCTGTGGTCCCAGCCCACAAAGGCAAAGCACTAGGGATCCACAGTCACCTTCAACCACCTATTGAATCCGAGGCCAGCCCAGGCTACATTCGACAGAATCGTACACGCAGGGCTGTGGGATAGACTTCCCCTTTGACTTTTCCGTCAGGCAAACTCGGTGCTTGAAATTAGCATACAAAACCAAACCTTGCCCCTTGGAGCGGCTAACACATGGTCCCCAAGTCTGTTGTTCCCAGCACTTCAAGAGGAGCGTTTGTGCTGTTGATTCCGACTTGAGCAGGGCTGTGATCCCACAG
Seq C2 exon
GAGTCGGTGACATTCAAAGATGTGGCTGTGAACTTCACCCAGGAAGAATGGCACCACGTGGGCCCTGCCCAGAGGAGCTTATACAGGGATGTCATGCTGGAGAACTACAACCACCTGGTGTCGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031907:ENSMUST00000213045:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=NA C2=0.076
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types