HsaINT0186156 @ hg19
Intron Retention
Gene
ENSG00000181896 | ZNF101
Description
zinc finger protein 101 [Source:HGNC Symbol;Acc:12881]
Coordinates
chr19:19779663-19788799:+
Coord C1 exon
chr19:19779663-19779775
Coord A exon
chr19:19779776-19788672
Coord C2 exon
chr19:19788673-19788799
Length
8897 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
ACACCTGTGGGATGTTTCAGGAC
3' ss Score
7
Exon sequences
Seq C1 exon
TTAGTTCCTCGGGGAGCCCCTGGTGCCCCGGATACGGCTGATTTTGTCGTGTGGGACCTGTTCTGGCTGCTCCAGCCCCAGGAAGGACCCAGGACACCCGGAAGCCGGAAATG
Seq A exon
GTGAGCGTGCGGAGCCGGGCGTCCGGAGACCTGAGGAGGAGCTGGTCGGAACCGGCAGTGGCTGGACCTGGGCCTCCCCGCGGCGACTGTGGGGGTCTGGGACCCGAGTCCCCCAGGCGCAGCTCGACCCTTGGTCCCCTCGGTCGCCGGGTGGAGCTGGACCAGCCGCCGGGACCCCGGGTGTCCTGTCCCGGCCCCGGAGCCCTCTCAGGGCAGCTCCGCGCCCGCAGCCCCGCGTCTCCCCAGATCGTGCGGGGGCCTCAGGAGGGTCTTAGGGGGAATCCCGCCTCGGGTGTGGGGTTCGTGCGGGAGGAGCCGTGGCCTGTGGGGTCCCCAGTTCCTCCTCCCTTAGGCGGTCCCCGTTTCCTTCGGAGTCTTCCAAAGGTGTGGGAAGCTGGGTTTCAAACCCACGACCCCGTCCCCCAGCTTCGCTCCTCCCAGGGCTGCAGTAAATCCCTAAATTTCCCCGCATTCCCCAACCCTAAGTTCTCCCTCCAGTACATCCACTTCACATTATTATTATTATCATTATTTCTATTATTTTTGAGACGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCACTGTCTGGGCTCACTGCAGCCTCCGTCTTCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGGTGCCCGCCACCACGTCCGGCTAACTTGTATTTTCAGTAGAGACAGGTTCACCATGTTGGCCGTGCTGAAGTCCTGATCTCAGGTATCTGCCTGCCTCGGTCTCCCAAAGTGCTGGGATTACAGGCTTGAGCCACTGCGCCTGGCAAGACCCAGTGTTTTAACTGTCATCTTTTCCAAGGAGCCCTAGATGGCACTTCTTAAAAAGTTCATTTTCCGTTTGTGAACATTTCACATGCGAGCAAAGCAGAAAATAACCCCCTGACACTCCGATGTTAAAAAAAAAAAATCACTGTGCCTGCCCTCTTTTTACCTTCCCTAGGCGCGGCCACCTTATCAGACAGTCTTTGGGTGGAGGCTTCTCTTGGGAACTTCACAGGGTATTGGGTCCTCAGCCCACCCTCCTATCTTTCTGGTCCTGGGTTTCAGGACCGTCCAGGGACTTCTTCCAGCTGCCCTCGGAAGAACGGGTGAAAAGTCTGTCCTGGCGTGGTTAATCTTTCCTGGTTGTTTGATGAGCCTCCTAGGGAGGAGTTCTTGTCTTTTGAAAAGAAGTTTCCTTAGGAAATTCCAGAGGGATTCCCTGCTGGCCCTTGGGGGTGGGGTGGGGCCAGAAACAGTAGAAAGAAACTTCTCCCTTCTGAGGCAGCTCAGGGTGGCATGCAGTGGCACAGTCATGGCTTACTACGGCCTCAACCTCTGGGGCCCAAGCAATCCTCCTGCCTCAGTCTTCCAAGAAGCTGGGACCACAGGCATGCGCCACGCCCGGCTAGTTTTTATTTTTTGTAGAGACAAGGTCTCACTATGTTGCCCAGTCTGCTCTGGAAGTCAAAAGCGATTCTCCTGCCCAGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCTGGGGCGGGAAGATCTCTTGAGCCCAGAAGTTTGAGACCATCCTGGGCAAAGTGGCGAGACCCCATTTCTACAACAAATACAAAAATTAGCCGGGTATGGTGGCGCATGCCTGTAGTCTCAGCTACTCAGGAGACTGAGGTGGGAGAGCCACCTGAACCCGGGGAGGTTGAGACTGCCGTTAGCTGTGATTGCGCCACTGCACTGAACGACAGAGTGAGACCCTGTCTTTAAAAAAAAAAAAGGAAATCTTCCATTATGGCTGCAGAATATGAATACATTCCCACAAAAAAAAGGCATGGTAGGTCGGGCGCGATGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCAGAGGCAGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGGGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCAGGCGTGGTGGCGAGCGCCTGTAGTCCCAGATATTCTGGAGGCTGAGGCAGGAGAATGGCGTGAATCCGGGAGGCGGAGCTTGCAGTGAGCTGGAGATCGCGCCACTGCACTCCAGCCTGCGCGACAGAGCGAGACTCCATCTCAAAAAATACATAATAAAAAAAGGCATGGTAGATAAGCAGAAATTAGTGATTTACAAAGATTCACCAGCACATCAGCTCCTCTCCTTTGCAGGTTGGGGAATTTGTGATGGTGGATAACTCTGTTCTGTTTTGTGTTATCTGGATTTGACAGATTAACGCTGAATCCTTTGGGATAAGTTTGGCAACATCTAGAAGTAGTCAGATATGATCTTTTGTTTACTGAATAGTTTATTATGGAAAAAATACTGAATGACATCTGAAAGTGATAGATACTCATCTCTTTTCCTAAGGATACTAATCTGTACTCCTAGGTCTCTCTCATGATCTCATGTAATCCCAGTTATTTCCCAGAGTTGCTGCCCGTAATATTAATACCATCACCTTAGGTGTTAGGATTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCTGCCTCCCGAGTAGCTGGGACTACAGGTGCCCGCCATTACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCCCCGTGCCCGGCAGATATTTTTCAACGTATGCTTTTTACATCATAATCATTTTATTCACGAGACATTTTCAGACTTCAAGAAAAATTTCAGTAGGCTTTGTTCTTTTCTAAAAATTGACTTCAACGGCTTGTAACAGCAATTCAAGATGAACTGAGGGCAGGAACACTGGCAAACACCTGTAATTCTAGGTACTTGAGAGGCTGAGGCGGGAGAATCGATTTAGCCCAGGAGTTCAAGTCCAGCCTGGGCAATATAGTGAGACCCCCATCTTAAAAAATGTGTGTGTGTATATATATATATATATAAATTATATGTATGATTATATATATATTTATAAGTTGTATGATTATATATATTTATAAATTTTATGTATGATTATATATATATTTATAAATTTATTTATTTTATTTTTTTACTTTCGAGACAAAGTCTTGCCCTGTTGCCCAGGCTGGAGTGCAATGGTACAATCTTGGCTCACTACAACCTCCGCTAAAGTGATTCTCCTGCCTCAGCCCTCCCCCACGCCCGGTAGCTGAACCCGGTAGCTGAATCCTGAGTAGCTGGGATTACAGGTGCCCTCCACCACACCTAGCTAATTTTTTTTAGCTTTAGTAGAGACAGGGTTTCGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGGTCCTCCTGCGTCGGCCTCCCATAGTGTTGGGATTACAGGCGTGAACCATCACATTCAGCCCTATATGCATTTTAGAACGGGCTTTTTTTTTGGCGGGGGGGGTCTCTGTTGCCCAGGCTGGAGTGCGGTGGCACGATCTCAGCTCATTGCAACCTCTGCCTCCCAGGTTCAAACGATTTTCCTGCCTCAGCCTCCCAAGTACCTGGGATTACAGGCACCTGCCACCACGCCCAGCCAATTTTTTGTATTTTTAGTAGACACGGGGTTTCAACATGTTGGCTAGGCCAGTCTGAAACTCCTGAGCTCAGGCAATCCTCCCACTTCGACCTCCCAAAGTGTTGGGATTATAGGCATGAGCCACTGTGACTGGCTGGTATTTTTATTTCTGAAAAAAGAAAACAAAACAAAAAAAACCAGACATGGGATTTTGATAGGGATTGTATTGAATTTGCAGATCATTTTGGGTAGTAGTACCTTCCAAATAATGTAAAGTCTTTTTTTTTTCTTTGACACAGAGTCTTGCTCTATCACCCAGACTGGAATGCAGTGGCACGGTCTTGACTCACTGCAACCTCCACTTCCTGGTTTCAAGCCATTCTCCTGCCTCAGCCTTCTGAGTAGCTGGGACTACAAGCGCATGCCACCACGCCTGGCTAATTTTTTTTTTTGTATTCTTAGTAGAGATGGGATTTTACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATTTGCCTGCCTTGGCCTCCCAAAGTGGTGGGATTACAGATATGAGCCAATGTGCTGGCTTTTTTTTTTTTTTTTTTTGAATTGGAGTCTTGCTCTGTCGCCGAGGCTGGGGTTCAGTGGCATGATCTCGGCTCACTGCAACCTCCACCTTCTGGGTTCAAGCAGTTCTTCTGTCTCAGTCTCCGGAGTAGCTGGGATTACAGGCACGTGCCACCACACCTGGCTAATTTTTGTATTTTCAGTAGAGACAGGGTTTCATCATGTTAGCCAGGCTGGTCTTGAACTCCTGACCTTGTAATCCACCCACCTCGGCCTCCCAAAGTGCTAGGGTTGCAGGCATGAGCCACCGCACCTGGCCAAATAATGTAAAGTCTTCGAACACATGAACACAAGATATTTTTCAATTTGTCTTTAATTTCATTCAGCAACATTTTGTTGTTTTTAGTGTACAAGTAGTCTTTCGACTTCTTGGTTTTGTAATTTCTAAGCGTTCAATTCTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCGCCCAGTCTGGGCTATTTGGTGTCCTGGGTTTTATATTTGTTGAGGCTTTTTAAATTATTATTATTATTATTATTATTTTGAGATGGAGTCTTGCTTTGTTGCCCAGGATGGAGTGCAGTGGTGCGATCTCAGCTCACTGCAACCTCTGTCTCCTGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGTTGGGATTACAGGTGCCTGCCACCGCGCCCGACTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATCTTGGCCAGGCTGGTCTTGAACTCCTAACCTTTTGATCCACCTGCCTTTGCCTCCCAAAGTGCTGGGATTACAGATGTGAGTCACCGCGCCTGGCCTATTCAATTCTTTTTGGTGCTATTGTTTGTGGTATTGTTTTCTTAATTTCTTTTTCACATTATTCAGTTTTGGTGCATATAAATGTAGCTGACTTTTTTGGTCTTGAGACAGTCTACCTCTGTTGCCCAGACTGGAGTACAATGGTGTGATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTCCTGCCTTAGCCTCTCGAGTAGCTGGGACTACAGGTGTGGGCTACCACACCTGGCTGATTGTGTATTTTTAGTAGAGATGGGGTTTCACCATGCTGGTCAGGCTGGTCTTGAACTTCTCACCTCAAGTGATCTACTCGCCTCGACCTCCCGAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCAGCCCCATTGTTTTTCATATTTGAACCATCCTTGCATTTTGCGGATAAATCTCTCTTGATGATGTCATATAATCCTTTAAATATGCTGTCAGGTATGATTTGCTAGCATTTATTTGAGGATTTTTTGCATTGATATTCATAAAGGGCATTTGTAGTTTTGTTTTTTGTAGTGTCTGTCTTTGGTGTCAGCATAATTTTGACCTCATAGAGGGAGTTTGGAAATGTCCCCTCTTCAGTTTTGGAAGAGTTTGAGGAGGATTGATAGCAATTCTTTTTTAAATTTTTGGTGGATTTCAGCAGTGAAACTATTTGGTGTCCTGGGTTTTGTATTCGTTGAGGTTTTTAAAATTATTATTATTATTATTTTGAGATGGAGTCTCGTTTTGTCGCCCAGGATGGAGTGCAGTGGCGCCATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCATGCCATTGTCCTGCCTCAACCTCCCCAGTAGCTGGGACTACAGGTGCCTGCCTCCATGCCAGCCTACTTTTTTGCGTTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCAATTTCCTGACCTTGTGATCCACCCTCCTCTGCCTCCCAAAGTGCTGAGGTTACAGGCATGAGCCACCGCGCCCAGCCAATTTATTATTTTTCTTAATTTATTTTATTTTTTTGAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGTAATGGCATGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCATGGGATTCTCCTGCCTCTGCCTCCCAAGTAGCTGGGATTACCGGCGTCCACCACCATGCCCAGGTAATTTTTTGTATTTTTAGTAGAGACGGAGTTTCACCATGTTGGCTAGCCTGTCTCGAACTCCTGACTTAAGGGGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCTGGCTATTTTTTTTTTATTACTATGCCAATCTCCTGCTACTACAGCTCTGTTCAGATTTTTTGTTTTTTCATGACTCAGTCTTGGTATATTGTGTATGTGTAGACATTTGTCCACGTAATCAGTTATATAATTTACTGAAGTATTCTAAAGGACTTCTGAAATTAAGCCTGAGTTGTACAGTTTTTTGTCCTCTGCTGTATGTATGTATTCTGCTGCTGTTGCTGTGAGTGTAAGGGGTGAGGTGAGGGGAATCATTCTATTGACCTATGACTTAGCCTCATTTAAAGATAATAGGCCGGGCACAGTGGCTTATGCGTGTAGTCCCAGCACTTTCAGAGGCGAAGGTGGGCAGATCGCTTTAGCCCAGGAGTTTGAGAGGAGCCTGGGCAACACAGGGAGAGCCTATCTCTACAAAAAATACAAAAATTAGCTGGGTGTGGTGGTGCCCACCTGTAGTAGGGAACAAGGTGGGATGATCACTTGAGCCTGGGAGGTTAAGACTGCAGGGGCCATGATTGTACCACTGCACTCTAGTCTGGACAACAGAGTGAGATCCTATCTCAAAAAATATTATATCAATCTTTATTTATTTATTTATTTGGAGACAAAGTGTCACTCTGTCACCCAGGCTGGAGTGCAGTAACACAATCCTAGCTCACTGCAACCTTGAATTCCTGGGCTCAAGCAATCCTCCTGCCTTAACTTCCCAAGTAGCTAGGACCACAGACACCTGCTAACATACCCTGCTAATGTTTTTAAAAAATTTTTCTAGAGGTGGCTATAACTTTTAATTTTTTTGTTTTTTGAGGTGGAGTCTTGCTCTGTTGCCCAGGCCCACCATGCCAGGCTAATTTTTCTATTTTTAATAGAGACCAGTTTTCACTATGTAGGCCAGGCTGGTCTTTAACTCCTGACCTCAAGTGGTCCACCCTACTACTCTACATGCCTGCTCTGTTATTAACCAAGTTTTCATATGAATACTGGCCCATTGAAGACTCTTCTTTTTCCTTGATCTATTTGTTTATCTCTCTGCTAATAGTATGCTGTCCTGAATGTGATGGTTTGGAAATCTTTGGTGTTAGGTAAGCCATCCACCTGCTATTCAGAAGGCTTTGACAATTATTAGATGTTAATTCCTGCACACCAGGTGGTGGGAGGTTTGGAAAAGTAGCTTTTGTTTACCTAAAATGTCTGTTTTGGGGATTTTTTTTTTTTTTTGAGACGGCGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTGACTGTAATCTCCGCTTCCTGGGTTCAAGTGATTCTTCTGTCTCAGCCTCCCAAATAGCTGGGACTACAGGCATGCGCCATCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGTCCTCAAGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGTCACCACACCCAGCTGTATTGGGTATTTATGAAATTTTGTAAGGATATCATTTGGAAGAAGGGACATCTTATTGAGTTTTTTCTAGGAACACATGTTATCTTTCCACTTACTCCATACTGCTTTGACATTACCTGACAGAAATTTTAAAATTCTTCCATTAGGACAATTAAATATTGATCATGAATCTTATTTACTACTTGATTAAATTTGGTCTAGAGTAAACTGCTTGCAAGCTTCAGGATATTCTCTCTTGGTATAACCACATGGGATGAGCTCAGTTCCCCAGGGGACAAGTTGTGACAACACGTGTGACATATTGTCTCCCAGGAAAGCTCATTAAAGACTCTGTGCCCAGAGTGTTTTTCTGGGGCTAGTGCCCTAGGCACCACTTCTAGTTTGGAACAAAAGAGTAGGCTTTCAGAAGGAAAACAGTTCAGTCAGTACCATCCTGTTTGTCAATACCATAAACCGTTTAGCCACAGTAAGCCACTTTGTCACTTAAGTTGATGGGATCCCTCTCGTAGTCTAAGTTGACCCCGATAGTAGCAAAGGTCGAACTTGGTAAACAGGCCTTTCTAAGGATACCCAGACTCAGGACTGCTGAAATGAGCGCTGTCTGCACACCAGGTGGTGGGAGTTTGTTGTGACAGGTACTAGAGATTCACTCTGCAAAGAGCATTTGGGGCAACGCAGCAGCACAACTGACTCCCTGGACCCACCACAGAGAGGGTGGTCCTCCTCTGTGGCTGGCTCTCTGAGTAGGTCAGTTCTCACACTGGAACTGCTGCGAGGGAGGAAGTGCGTGTAGATAGGAGGAGGCCGATGACTCAATCATGGAGTGAGTGTTTGGAGAGCCCGGCGTCATGGGATCACTCATGTATTGAGTAGAGATCCCCAGTGCTGAGTCTCACCCCTCCTCCTCCACACCTGTGGGATGTTTCAG
Seq C2 exon
GACTCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGAGTCCTTCCCAGAAGAATCTCTACAGAGATGTGACGCTGGAAACCTTCAGGAACCTGGCCTCGGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181896-ZNF101:NM_033204:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=PU(95.0=92.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)