HsaINT0186178 @ hg38
Intron Retention
Gene
ENSG00000197961 | ZNF121
Description
zinc finger protein 121 [Source:HGNC Symbol;Acc:HGNC:12904]
Coordinates
chr19:9584186-9584497:-
Coord C1 exon
chr19:9584461-9584497
Coord A exon
chr19:9584349-9584460
Coord C2 exon
chr19:9584186-9584348
Length
112 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CGTTTCACTCTCTTCTCCAGGGG
3' ss Score
10.33
Exon sequences
Seq C1 exon
TTTCGCCTTTATCGTGGTGGAGTCCACCCTGGCTGTG
Seq A exon
GTGAGTTCCGCCTGCTTGGGGATCCCGGAGATAGCGGGGGGCGGCAAAGGAACGATTGGGTGCTGTCGCCCAGGAGCCTCTCCGATCCGCCTCGTTTCACTCTCTTCTCCAG
Seq C2 exon
GGGCTGTCGGTCCTCCTTGCGCGGCCAGTGGCTAGAGGCCGCAGGCTCAGTGGGTCCCAGTCAGGAGCCAGGTCGGGAAGTGTGTTTGTCCCGACTCCGCGCGTTTTCTGGAGTGGTTTCATCCGCTGTGCTCCCTTCTTCAAAAGCTTGGAAAGCAACCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197961:ENST00000586602:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTTATCGTGGTGGAGTC
R:
TCCAAGCTTTTGAAGAAGGGAGC
Band lengths:
186-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains