HsaINT0186303 @ hg19
Intron Retention
Gene
ENSG00000105497 | ZNF175
Description
zinc finger protein 175 [Source:HGNC Symbol;Acc:12964]
Coordinates
chr19:52076403-52084770:+
Coord C1 exon
chr19:52076403-52076654
Coord A exon
chr19:52076655-52084643
Coord C2 exon
chr19:52084644-52084770
Length
7989 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
GCTGGGGTACACTGTTACAGGCA
3' ss Score
3.4
Exon sequences
Seq C1 exon
GCTTCTGCAGAACCCCCAGGTCAGGCCACATCATTGAGGCTGCAGGATCTCTCTTCATAGCCCAGTACGACTCTCCGCCGTGTCCCTGGTTGGAAAATCCAAACACCTATCCAGCTTCTGGCTCCTGGGAAAAGTGGAGTTGTCAGCAAGAGAGACCGAGAGTAGAAGCCCAGAGTGGAGATGCCTGCTGATGTGAATTTATCCCAGAAGCCTCAGGTCCTGGGTCCAGAGAAGCAGGATGGATCTTGCGAG
Seq A exon
GTAAACAGGGGCAGCCCTGGGGATAGTTCTCCAGAACGTGAGGGCAGACACAGGATGCAGCAGGTCTGGGCTCCCTGCTCCTGAGTCAGTCTTGAGCCTCCTGTCAAGCGAGGACCACAGAGGCTGATGTTTCCACATTCATAGGCTATCTGTGTTCTAGAGGAAACCATGAACTGGCTGATAAAAGAGGATAGTAGAGGGTTGGCCTTGGGTCAAGAAAGAAGAAACTGTAGTCCCTGGTCTGATCAGAAGCCCCAGTCATAGGATGGAAAAGCTGACTCTTTCCTGCTAAGCACTGGTTCTGCTCCTTCATCCACCACTGGGTCTTTGAAAAATTTCAAGTGGTCCCCCCCACCAAATTCCTTGCTTGGTCCATGGGGTTTGGCCCGTTTTTCCTCTGTTCTCATAAGGTGCGGCAAAATCTCCTTCCTTTGTAATTTAAATAGTCACAGGGAGGTAGAGTGAGAAGAGGCTTTTAAGGACCATGTGAAGAGGCTTTTAAACACTTTTTCCTGTTTAAAAAGGTGAACAAAAAATGCTGGAAAACAGTGTTTCCAGATTGCCCACAGATAGAAATAGTCAGGATTTGGTAACAAGAAATCAGAATTCTTGGTATAGTCAAGATTTCCTGAAATCCTAAATTATTCTGTGTATCTCTTGATGCTTTATTTACAAGTCTTTAAATAGTATGTGACTATAATAGTAAACAGTGTACCATTGTTCTGTGATGGGTTTATAACCAAATTTACAGAGATGTTCTGTTTTTTAAAAAAAGTATAATAAATATGTGTGTTATTATCCTGAACCAATATATTGTGAGATTATATATTTCAGTAACCTGTTAAAATCATCTCAACCTGCTAGAAACATTTGATAATAGAAAGTATTAAAAGAAGGGAACATTAACACAAAATAAATTGCACATATAAATCATTTTCAAAATTGTAAATACCCCAAATATTTAAAAGTCGTTCTTAAAAGAAAAATTGAAACATACAAGTTTAGGTGGGGCACAGTGGCTCATGCACTTTGGGAGGCCGAGGCGGGCGGATCACTTGAGCCCAGGAGTTGGAGACCAGCCTGGGCAACATGGCGAGACTCTACAAAAATACAAAAATTAGCCAGGTGTGGTGGCATGCACCTGTAGTCCCAGCTACTGAGTACGTTGACGTGGGAGGATCACCTGAGCTTGAGGCGGTCAAGGTTGCAGTGAGCTGCAATCATGACACTACACTCCAGCCTGGGCAATAGAGTGAGACCCTGTCTCAAAACAAAACAAGTTTAAAACATGAAATTGTCTAAGTCTTTGTGACAGCAGTGCAGATGCACAAACGTTTCTCTCATTTGCATTGATGTTGGTCAACTTGCGTGTTCAGAACATCTTCAAGTTTAGCGTTTTAGGACACATGTTCAATATAAGCTTTTTTCCTTTTTTAACAATGAAATTTTTTTTCTGCTTGACCTGATTTCCAGTTTATCATTTGAATCAATACTGCTGTCGCTAATTCAGATTTTCCATCAGTGTCTGAATTCATGTCAGAGTATATCCCAGTACCATGCACATTATCTTCTCTTTGTGGTGTGTATTTCCCTCTGCTCTGGACAGTACTATTTTTATTTTGTTATTTTTATCTTTTCTAATGTGATGGAAATAAAGATAGTATAGTGTTTTAATTTGCATTACTTTGTTTACAAACAGGCTTTTTTTTCATAATTTTATTGGTCAATTACTTGTCTTTAGTGAGTTACTTTTTCTTACCTTTTGATTTATATTTTGGTTTGGTTTAGCCTCCGGATTTTTAGAGAGGTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGAAGCGCAGGCTGGAGTGCAGTGGCGCAATCTCTGCTCACTGCAAGCTGCACCTCCCGGGTTAACGCCGTTCTCCTGCCTTAGCCTCCTGAATAGCTGGGAGTACAGGCGCCTGACAGCACTGCTGGCTAATTTTTTTGTATTTTTAGTAGAGATGAGGTTTCACCATGTTAGCCAAGATGGTCTTGATCTCCTGACCTCGTGATCCGCCTGCCTCAGTGTCCCAAGAGAGTTCTTACACAGTAATAACCTAAGGTCCTTTTTGCATATGTTTGTAAATACTTTTTGTTACTTTTTCCTTTGAAAGTAGGTTTTAGTTTTGTTTGAACATAGGAAAGAGGATCAGATGGTTTTGTGAAGCCTGTAATCTTTTAAAAGGGCTGTCACTTGCTATATTTTTACCAAAGTTCCAGCTCCTCCCAGGCAATCACATTTTACATTTTTAGCTAATTATTTTGGCATTTACCTCCTAATCTTTTAGTGACATGCTTATATTGCTGCCTCTTGGATTGTTAATTAACACGTTAATTAATTAAGAAACATGTCATTAAAAGGTTTGCTTTTACCCGCTTCCTCATACTTTCACCCCCAACACCTGCTTTCCTTGCCCATCCTTCTCTAGAACTGGTTCAGATTCTGATCAGGTCAATCTTCCTTGTTTGTGATTATGACTGTGTAAACTATATTCAGAGCTGCCTGTATAGACACCCTGATAACTCTCTGCCTGCATAACTTACGGTTTTTCCCTGGAGCACACAATTTTATGGATTATTTACTTGCCTATATACATGTTAATGTATTATACCATTTTCTCCAAGTGTGTACACACTGTCTTCATAAATTGAATTTGTTACTAGGTAATTGCAAACCCTCGCTATTTCAGGGACAGTTTTTTTTTTTGTTTTTTTTTTTTTTTGAGACAGAGTTTCGCTCTTGTCTCCCAGGCTGGAGTGCAATGGCGCGATCTTGGCTCACTGCAACCTCTCCTCCTGGGTTCAAGCCATTCTCCTGCCTCACTCTCCTGAGTAGCTGGGATTACAGGCACTTGCCACCACGCCTGGCTAATTTTTATATTTTTAGTAGAAACAGGGTTTCACCATGTTGGGCAGGCTGGTCTCAAACTCCTGACTTCAGGTGATCCGCCAGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACACCCGGCCTTCAGGAACAGTTTTAATCCTCATAACTTTGCGAGGTACTGCTGCCATTATCCCCCCTTTACAGACAAGAAGACTGAGGCACAGAATGAAATAAGTGGCTCAAGTTTACATAGTCAGCAAGCAGCCAGCCTGGGATTGAAGGCAGGCAGTTTGCTTGAGGGTTGGGGCTGTCAATGCCATCTCCTTGAGGAAACCTTTCCTATTGCTTTTTTGTCTTGATGCGATTGGACCTGGCTGTTCTCCTGGCGCCTCACGCTGTCTTCTCATGGTGCTGTGTTCACCATCACCTGGGAATTCTTTTTTTCTCTGTCAAGTGTCCAGTTCCTTGTGTCTTGAATCCTTTCTTGAATCCTTTGGCTTTCTCTTCCACGGTTTACCGTTACTCTCATTTCGTGAAAGTGCATCCCCTAGGAGTTCTTGGGGACGGTACACGGCAGTAAATCCTGTGAGAACTTATCTGAACATGTCTGTTCAGATAACGGAGACTAAACTTAAGAATAGGAGAATCACTTGACCCAGGAGGTTGAGGCTGCAGTGAGCTGTGATGGCACCACTGCACTCCATCCTGGGTGACAGAGTGACATCCTGTCTCAAAAAACAAAAACGAAAACAAAAGACCTGAGAGGTTTACATATATGAGCATGACATGAAAGTGAAATGATATGAAAATGAATGATATGAAAATGTCACGCCAAAAAGCAAAGATCATATATTTGCATATTTAATAGAAAGATGTCACGGAAAATGACTTGATTTACCCTCACACTAAGTTGATCTTTGCCTGGGTTCATAGGTTGGAAATCATTTTTTTCTTCCTAAAACACCCCATATACTACTTCCTTACCACACACATATAGTCTCTCTGCTCTCAAATCCTGAAACTCTTTATTTTTAAGCTGTTAGTCTCCATTTAAAAGGGTTTTTATGCTCTGTCATTTTCTATTTCTTTGGTTTTGGACCCTCTTTCTGGAAGAATTTCTCAACTTTATTTTCTAGCCCTCCGATAATCATTACTGCCTTAAAAAATTTTTAAGAGCTTTTAGATATGAATACTCCTTTTAATGACATGATGTTTTTGTTTAATGATTGAACTATCTTACCTAAGGATATTTGAGATATTTTAAAATGTAATTTTATGAATAGATAATACACAGCATTCACAAATTAAAACATCATGAAAAGTAATTTTTTTACAAAATACTCCTTTCTCTCTCTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCTTCAGCCTCCCGAGTAGCTGGGACTAAAGGCGCCCGCCACCACACCAAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCATACCCCTCTCTCTTTTGTCCCTGATTTGTCCAGGTTTCTTCCACATAGGTAATTATAGTTAGTCATCTGCCTTTACCTCCCAAACACTACCACTTTCTTCCAAAGTTAACTACTTTCGTCACTTTTAAGTTAATTACTTCATTTTAAAAAACGAGGCCGGATGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCTGATCACGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAAAATACAAAAAATTAGCCAGGCATGGTGGCGGGTGCCTGTAATTCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCCTGAACCCGGGAGGTGGAGGTTGCAGTGATCCAAGATCATGCCATTGCATTCCAGCCTGGGCAACAAGAGTGAAACTCCATCTCAAAAAAAAAGAAGCAAGCCCCAGAATGGGAAAAGATTCTTGTTACACATACAGCTGACAAAAGGTTCCTATAAAACGTTGAGGACGGCTGGGCGTGGTGGCTTATGCCTATAACCCCAGCACATTGGGAGGCCAAGATGGGAGGATTGCTTGAGCCCAGGAGTTTGAGACGATCCTGAGCGTCATAGGGAGACCCCATCTTTACAAAAAATAGAAAAATTAGCTAGGTGTGGTGGTGTGTGCCTGTGATCCCAGCTACTCAGGAGGCTGACACGGGAGAATCACTTGAGCCCGGAGGTCGAGGCTGCAGTGAGCTGTGATTGCACCACTGCATTCCATCCTGGGTGACAGAGTGACATCCTGTCTCAAAAAACAAAAACAAAAGACCTGAGAGGTTTACAGGACAATGAGATACTCCTTCAGAAACACAGAAATGGCCACGTGCAGTGGCTCACACCTGTAATCCCAAAACTTTGGGAGGCCAAGGTGGGTGGATCGTGTGAGCTCATGAGTTTGAGACCAGCATGGGCAACATGCTGAAACCCCATCTCTACAAAAAATACAAAAATTAAGGCTGAGTGTGGTGACTCACACCTGTAATCTCAGAACTTTGGGAGGCAGAGATGGGCCGATCACTTGAGGCCAGAGTTTAAGACCAGCCTGGCCAACATAATGAAACCCCGTGTCTACTAAAAATACAAAAATTAGCCAGGCATGTTGGCAGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGTCAGAGGCTGCAGTGAGCCAAGAGCATGCCAGTGCACTCCAGCCTTAGTGACAGAGTAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAGCTGGACATGGTAGTGCACGCCTGTGGTCCCAGCTACTTGGGAAGCTGAGGCAGGAGGATCGCTTGAGTCTGAGAGGCAGAGGCTGCAGTGAGCCATGCTCGTGCCACTGCAATCCAGCTTGGGCAACAGAGTGAGATTCTATCTCCCAAAAAAAATTTTTTTTTTTTGAGGAAAAGTGTTTTTTAACCCAGTAGAAAACTGAAGAAGAGACTTGCTTGAATAGGCTGGTAAACATGGGAAGATGCTCAGCTTCATTAGTCATCTGGGAATTGCCAGTGTAACTCCCATGCCTGTACCAAAATGCATACAGTTACCAACACTGATAATACCAAATGTAGGTGAGGATACAGAGCAACCAGAAGGATTTTGTGTGCTGCTGGTAAGCATATAAATTGGTACAACCAATTTGGAAAATGATTTCTAATTTTCTACTAAAGGCGAGCATGTTTTTCCCATGACCCAGAATTCCACCCCTGGGTATATGCCCAACATCTGTTCTGAACTGGTATTTAAATGTAGACCTGTGCTGTCCAGTATGGTAGCCACTCACCACATGTAGCTATTGAGCACTTGAATGCGGCTGGTTCACCCTGAGATGTGCTTGAAGTATAAAATATATGCTGACTTCTGAAAACTTAGTATGAAAACAGAATGTAAAGCATCTCATCTCGATGATTTTTAAAATATTGAATATAGAATATTCAATATATAGAATATAGAATGTTTTAATATATGTAATATTAAAATATTACATATAGAAATGATAATGTTTTGAATATAATGGATTAAGTAAAAATATCATTAAATTGATTTTATCTGTCTTTTAAACATGGCTACTAGACAATTTTAAGTTATATGTGTGGCTCACATTCACGGTTCATGTTTTATTTCCATTGGATGGCTCTCCTCTAGAGGCTTGATCAGAGTCCACTTGGATTTCTTTGTTTTTGGAAATGATACTTAATAGTTTGCACACCACGTATTTTCCTACCTCTCTACTTTTATTTTTTTATTTTGCATCATATTAGGTGCACTTTAATATCTGGTTATCTCTCTCCTTGTGATAAAATTGATGATTGGGTTCAGATATTGTCAGCCTACTCCTCCATTATAAAGACCCATCAGTCTTTCATATGGTTTTAGCAGTCATTGGTGATCAGTAACAGTGACATTTTTGTTTTGTCCTTCAGGCTGCATTTATCATCTGCAGTACTTCTGTAATGAAGATCTTTCCATCATCAGTCCTTTCATTAACCTAATATTAGTTATTACAGGAGAGATCATCTTGTTGAAATATTATATGATCATATCTCTTCCCTGCACTTAAAATCCTGAAATGGCAGTCCGTTCATTAAAATAAATAATCCATACCCATTATATATTGAGGCACCAGCCCACTTCTTTGGAGCTTGGATGGTAACCACCTTCCAAACATGACATAGTCGCCTCTTATCTTACACAGAGCTGTCTGCTTCTCCCTGAATTCACAGTGTTTTCCTACCTCTCTAGTTTTATTCATGCTCTTTTCTGGAAAATGATTTCCTTCACACATCCTGCATCACAGTTCTTACTTCCAGCGTAAGCTTCACCAACTCTAAGTAGCATTACCTTCTACTCCTAGGTAGAATTTGCCTTTCCCTAATTTGCCCTTCCCCAACAGTGTCCTCTGCATATATTTCTACCATGTTCCCTTTTTAACCCTGTAGTTGAGCTTTTGTATTTACATGTCTTCCAAGTCTCTGAGTTGCTGCAAGAGTAGAAGCTTATGTAATTCTGTGTTGAGCACCAGAACCCAGCTCAACTACAGCCTCACATGTAGTTGCTTCGTCAACATCATGCTGGTTATTCCTAAATTAGCTAAAGGACTTAGAGGGAACCCATTTCTGGCCTCATTTTTGAAAAAAAAAAATGAATGAATGAATGTAGGTGTACAGTGGATGGAGGATATTTCTCTTATTTTTTTTTAAATCCCTAAAAATGTGAAATAGGTGTTTGGTGGGAAGCCTCTGTGATGGATCGTGGTGAAAATCATTAAAAGCATGTTCCTCCTATATGTGCCATCCCCACTCGCCAATGATGACCTAATTCACAGTGAGCTGGGGTACACTGTTACAG
Seq C2 exon
GCATCAGTGTCATTTGAGGACGTGACCGTGGACTTCAGCAGGGAGGAGTGGCAGCAACTGGACCCTGCCCAGAGATGCCTGTACCGGGATGTGATGCTGGAGCTCTATAGCCATCTCTTCGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105497-ZNF175:NM_007147:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)