MmuINT0179923 @ mm10
Intron Retention
Gene
ENSMUSG00000055102 | Zfp819
Description
zinc finger protein 819 [Source:MGI Symbol;Acc:MGI:1921650]
Coordinates
chr7:43609786-43612109:+
Coord C1 exon
chr7:43609786-43609978
Coord A exon
chr7:43609979-43611982
Coord C2 exon
chr7:43611983-43612109
Length
2004 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CAGTGAGTATGTTGTTTCAGAGA
3' ss Score
3.06
Exon sequences
Seq C1 exon
ATTCCTGAGTCAGGCCAAGACATTCATGCTGCTGACTTTCTAGCACAACCAAGCTGAGTTCTGCCTGTCAGCTCTACCCAAAGGCTCCACATGCTCACCTGAATCCTGAGGGAATCCAGACATGGCTGCTGACATGAATTTCTGTCAGAAGCTCCAGAGACTGGGAACAGAGGAGCAGGACGGGCCGTGTGAG
Seq A exon
GTGAGGAGAGGCGACTTTGGTTCCATTTTTCCAGAACTAGAGTGGAGACATTGGAAGTATCAGATTGTGAGTTCCCTTCCTGGGATAGCCTTGATCCTCCAGCTAAGGGCGGAACTTGGACAGCGGAAATCCCAGCCTTTCTTTATCTTTTCATGACATGTTGTTCATTGTGCTGCTTCTTGGCTTTGGGTTTATCTCTCTGCCCATCTCTGACTCCCTGGGGAGTCCTGCTTCTGTTCAACCCAGGCAGAGAGGACTAGCCAGTTAAAGAAGTAGATGCGTCCAAGTTTAGCTTGCGGAACCAGACAGTATTTTGACTTACTTTTTTTTTTTTTTTTTTTGTGGTACAATTTTTTTTTTTAATTAGGTATTTTCCTCATTTATATTTCCAATGCTATCCCCAAAGTCCCCCATACCCTCCCACCCACCCACCCCCACTTTTTGGCCCTGGCGTTCCCTTGTACTGGGGCATATGAAATTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCTGACTAGGCCATCTTTTTATACATATGCAGCTAGAGTCAAAAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTCCTTGGGTACTTCCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCCAGGCCCCAGCATAGCCTCACAAGAGACAGCTATATCAGGGTACTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGAAGCTGATTATGGGATGGATCCCTGGATACGGCAGTCTCTAGATGGTCCATCCTTTCGTCACAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAATTCTAAGAAGGGGCACAGTGTCCACACTTTGGTCTTCGTTCTTCTAGAGTTTCATGTGTTTTGCAGATTGTATCTTGTATCTTGGGTATTCTAAGTTTCTGGGCTAATATCCACTTATCAGTGAGTACATATCATGTGAGTTCTTTTGTGATTGGGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAGATGCACCACATTTTCCGTATCCATTCCTCTTGAGGGGCGTCTGGGTTCTTACTATTTGGAACACAGATGAGGGGTGGCCTCCATAGGCATGAAAAATTTGGGCAGCTGTGTCACTGACATCCCCACCATAGTTGGTGATTTGTGAAAGCTATAACCCTAGAATTGCCCCACACCCAGTTGTGTCCAGCTGATAGGTTTTTATTACTTCGGGAATGGGTCTTTGGACCTTCCAAGAGAGCCCTCTGTTGCTCTCTAAATTCACTGTGGATTTCCCTACTTCTCTGCCTTCACACTCCTTCTCCCCCCCCCCCCCACCTTCCCGGAAGAGCAGTGTTCTAGCATAGTTTGAGTATCTCAGTTACAGTTGAAGCTGCTGTGCTGTGTGACAACTGCTCCTCAACTTGTCCCTCCCAACATTTTCTCTGTGTATATTTGTAAAATGTTCCTCTGTAGCCCACGCTGAGTCTTTATTTGCTGTTCCACCAGTCTGAGTTTCTCATAGCATTGAAGCTCATACTAGAACACTGAACCCTAGGAACCCCACACCATTCTAGACAAGCATATCATAACTTAATAGCTGTCACCCTGCATAATTCTAGTGGAGAAATTCTGTCCTCCTTGGGGTGGGAGTGGGTGAGACAAAGTATACAATACATGGCAGGACACTTGTTTCTATACTTCTTTATGCCTGAACATAAAATGTGAAATCAGTATTTTTGTGATAAGTTTAGTGGTATGACTGGGGGTGAGGGTGAGGGGTGGGGTAGGGAGTGGGGATCACTAAAAACACATGTCTACTTAGTGTATCTTTCAAGGAATAGTTCACAGTGAGTATGTTGTTTCAG
Seq C2 exon
AGATTGGTGTCCTTTGAGGATGTAACTGTGAACTTCAGCCAGGAGGAGTGGCAGCACCTGGACTCCGCCCAGAGACGCCTGTACCAGGACGTGTTGCTGGAGATCTACAGCCACCTCTTGGTAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055102:ENSMUST00000032661:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types