HsaINT0186316 @ hg19
Intron Retention
Gene
ENSG00000188629 | ZNF177
Description
zinc finger protein 177 [Source:HGNC Symbol;Acc:12966]
Coordinates
chr19:9486992-9489020:+
Coord C1 exon
chr19:9486992-9487099
Coord A exon
chr19:9487100-9488934
Coord C2 exon
chr19:9488935-9489020
Length
1835 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
GCTTCTGTGTTCTCCTCTAGCTC
3' ss Score
9.89
Exon sequences
Seq C1 exon
AGATGCGGTCTTGCTGTGTTGCCTAGGCTGGTCTCAAACTCCTGCTCTCAAGTGATCCTCCTGCCTCAGCCTCCTGAGTACATTTATATTTAAAGTAATTATTGATGG
Seq A exon
GTAAGTACTTACTGTTGCCTTTTTGTTCATTCTTCTGTGGCTGTTGTACAGATGTTTTGTTGCTTTCTTCCTCCCTTGTCTTCCTTTGTGATTTGATGACTTTCTGTAGTGATACGCTTTGATTTCTTTCTCTTTTCTCCATAATATAGGTTCTTGCTTTGTGGCTACTATGAAGCTTAAAACATCCTGTAGTTTTAATAGTCTGTTTTAAGCTGTTAACAGCTTAGCTTTGATTGCATACAAACAATTTATACTCTTCCATTTCCCACATTTTATGTTTTTGATGTCACAATTTACATCTTTCTATATTGTATATTAACAAATTATTATAACTTTTTAATATTTTTATCTTTTAATCTTTTACACTAGAGATAAGTTATTTAGATACCACTGTTACAGTATTAGGGTAATCTGGATTGAGTATATAATTACCTTTACCCCAGTGGGTTTTATAATTTCATATGGTTTCATGTTACTAAGTGTCCTTTCTTTTAAGCTGAAGAATTTACTATTTCCTATAAATCAGCTCCATTACTGATGAAGCCCCTCATCTTTTGTTTGTCCAAGGAAGTTTTTATCTCTCCTTCATTTCTGAAGGCCATTTTTGGCAGGTAAAACATTCTTGGTTGGCAGTACAGTCATGCACTGTGTAAAGACATTTTGGTCAGTGATGGTCCACATATGTGACAGTGCTCTCATAACATTTTAATAGTGCTAAAAAATTCCAATCACCTAATGACATAGCCAGTGTAACATTGTAAAGCACATTACTCACATGTCTGTCATTTAAACCTGCTGCACTGCCAGTCATGTAACAGTAGTAAATATGGTTATGTACAGTAGATTATATACAGTACATAATAATGAATAGTAATAAGTGACCACATTACTGGTTTATATATTTTTATACTATTTATTGTTATTTTAGAATGTATTCCTTCTACTTACTAAAAAAGAAAAGTTAACTCAAAAACAAGCCTCAAGCAGATGCTTCAGAAGACATTCTAGAAGTCATTGTCACCATAGGAGATGTCAGCTCCGTGCATGTTATTGCCCCTGAATACCTTAAGTGGGACACGGTAGAAGGTGTCAGACAGTGATACTCAAGATCCTAACCCTATTTAGGCCTAGATTAATGCGTATGTGTCTTCGTTTACAACAAAAAAGTTTAAAAAGTAAAATCGGGCAGGCAAAAAGGGCCTGGAAGGTAGGCTACTGAGTTAAGAAGACAGAGTCCTAGCTCTGCTATAAGATTTGCAGCACTAGATTTTGATACATATACAGCTAAGTGTACTAAATGTTGTTCTGGAATGTCACCCTTTTATTATGAAATGCAAATATGCTCACCTTTATGGTCCTTATGAGTTACTCCTTATTGTTCTAAGTAATTTCGGGATATTAACTCAGCCCAACCCTATGAAATTGGTCCCATTCTAACAATGAGGAACGTGAGGGTGTGATATAAGATATTCCAAACTCATCTTGAAGATTTCTTAGTCTATACTAGACTCAGCTATTTCTCCAGTGAGTCCTGGTTTCTGTCACGGGTAAATGATATTCAGAGACAGTTTTGCACTTTAGAGGCTCATTCCTCCTGAGCTGTTAGCAGTCATAAGCCTTTTTAGTGGTTCAGGCTAGAAAAAAGTCCAAGAAAAAATGAAAAATGCATACTATATTTCTAATTTGAGGATATACTGTGTTCTTGGATAAGGAGGCAAATTGTAACTACACTCTATGTGTATGTTGTTACCCTTTAGTAAGAAGAAGCTTCCCAGCCTGCTAGTGTTGAACATCTAGCAGGCCTAGACTCTAATGGCTTCTGTGTTCTCCTCTAG
Seq C2 exon
CTCTGCCTGCTTAGGACTCTGCCCAGCCAGGAAGGAAACCTACAGGAGGAAGAATGGCTGCAGGGTGGCTGACAACCTGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188629-ZNF177:NM_003451:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGCGGTCTTGCTGTGTTG
R:
CTGTGACCAGGTTGTCAGCC
Band lengths:
194-2029
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)