HsaINT0186379 @ hg19
Intron Retention
Gene
ENSG00000157429 | ZNF19
Description
zinc finger protein 19 [Source:HGNC Symbol;Acc:12981]
Coordinates
chr16:71512782-71516046:-
Coord C1 exon
chr16:71515985-71516046
Coord A exon
chr16:71512909-71515984
Coord C2 exon
chr16:71512782-71512908
Length
3076 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCAGGAACCTGTTGTTTTAGGAG
3' ss Score
3
Exon sequences
Seq C1 exon
CCTTTGCCTGCTAAGAGGGAGACCAGGTCATGGCAGCCATGCCTCTGAAAGCTCAATACCAG
Seq A exon
GTGAGCTGTGGATCCCTGAGGTCAGCTCTATGGAGGTCTGAGTTGAAGGAAATGAGGTGGATAAAGGTGATTCTGGCAAGTCTTAGAGCCAAAGCAGTAGGAAAACCCCTGCTGATTCCCTCCAGTAGGACTGGGTGCTGGGGAAAGAGCTAGGGGCAGTGAAGATGGAAACAGGAGAGAGTGATCTGGAAAGCTGAAGTACAGCCTCCTGAATACTGAGAATCTCTCCTGGGCCAGAGGATCCCCAGGTTCAGTAGCTGTCCCTCTGCAGAGGGAATTGTGAGAACGAGGGACTCAGGCTGGTGATGTAGGGATCCAGGATAGGATGGAAGTGACTAAGATCAGCAAGGGCACAAGGTTTTTGGGAAGTAGCAGCAGAGGGACAGCAGGAAGAAGACAAGAAAGAGGGGGCCTATCTAATTTGTCCTCCAAAAGAAAGGAGGAAGTTTGGGCTTCAGAATCAGGAAACATATGTCCTTGAGGTCAGTACTGCTGGCGAAGTGAGGCAATGGGCTGTGATAGGAAAAGTCTACACTCCCAACAGGACACCTGAAGTTAGGGATCTGTTAGGCCTCAGTGGCATCATAGCCTTGAGCCAGTCACATAATTGCTTTGCATCTTAACTGGATTCATTTGTAAGGTGAACATAAGTACCTTACATTTTTGGGACAGAGAATTGATTTCTTGAATTACATTTCACTTTTTGAGACGGAGTTGCTGCTTTGTCATTTCTTTTCTCCTGGCACTTATTTATCCAGTAACTTAGTATCCATGAACCATATCCCAAATCATAATCTCATATTTCTCACATCCTTCAGTTTTCTCTACCTGACTGTGTCACTGATATATCAGCTTCCTTGGAGCTCCCACCCTCTTCTGGTTTTTCCACAAGTGTCTGACATCACACTATATTGCAGTCCTGATCACTCAGTTTCTAAATTGCTGTGTAATTGTTGACTATGTTCTCCCCTGATACCATTTCCAGAGAGACACAAAGTCTTGTTGTTTTTCCTTCTCTCTCTGCCACTTGTGCCATCTTTCAGATTACATTTAGAGTTTGTTGTTCCTTCTCTGGAATTTTGTTTGCAGCGCTTCCCGGATAGATTCTCTGTGTATAGTTGTGCACCTTTCCATCACTTTGTCACCTAATACAGCTCAGTTTCCTGAGTTTGGATTTTATCCTCCAATCCAGGGTTCTCAGACTTCAGTGTACATCAGAATTACCTGGAGGGCTCACTGAAGTATGGACTTCTCTCAGAGTGGGGCCCAAGAATTTGCCTAACAAATTCCCAAGTGTTGCATCCGCTACTGGTGGTGGTCTGGAGACCACACTCTGAATACCACTGCTCTAGTTAGTGGTGATTCATTCAAGAGGTTCATTCAGGAGTTGATGAAGTCAGGTTGTCAGCTGGGCAGAGGATAGATTCAGTGTGGGACAAGACTGGAAGTAGAGCTAAAGTGTCCCCAGCTGTTGACCTAGTTTACTGATTGTACCACAGTGAAGAAGAGTCAGATTCCAGAAATAACGTAGGTAATAAAATTGGCAGGACTTGAGTATTAACTGTCAGCAATGAGTGATGATGGGGGTTAGAATGTCTAGGATTAATCTGAAGTTCTAGCATTAGAGACTGGGTTGAAATTGGTGTTATCAACAGAGAGGGAAAAATATTGTCACACTGCCACTTAGTTTATATAAATTAGAAAGGAAGCCATTTTGGGGAAGATGAGTTTGGGGTTGCTTGGTGAGTCAGTGTGTTGGGTCATCCAGAGAGTCTGAGGCAGTGCTGGGATGAGGGGGATGTGGATATGTGCAAAATCAGTTGAGGCATTGGAAGGTCGGAGTGTATTCCCTGAGCACTCCGGTAACGAAGTTCAATACCAACATCTGAGGAGTGAATAGAGGCTCTAAACCAGATGCCAGAACTTTGTGGAAAGGTAGAGTTGAGGCCAGCAGGGAGGGAGAAGGGTGTCTGTTGAAAAAGCATGAGGGGCTGGGCATGGTGGCTCATTCCCGTAATCCCAGCACTTTGGGAGGCCGAGGCAGACGGATCTCTTGAGTCCAGGAGTTTGAGACCAGCCTGGGGAACGTGGCAAAACCTTGTCTCTACAGAAAATACAAAGATTAGCCTGGCATGGTGGTGTGCACCTATAGTCCCAGCTACTCAAGAGTCTGAGGCGGGAGGATCACCTGAGCTGGGAGGTCGAGGCTGCAGTGAGCTGAGATTGTGCCACTGCACTCCAACCTGGGTGACAGAGCAAGACACTGTCAAAAACAGAAAAAAAAGAGAAAAAGAACCAAAACCGAAAGAAAGAAAGAAAAAAAAACCCAAGAAGCATGAGGCTTGGTTGGCAGAAGCTATTACAGATTGTCTTGGAGCTATAAAGATAAGGAGCTAAAAGAGCTACCCAGCAGCAGCAATTTAATTCTAGAAGCATGGTTTTCTAGGAAAAGCCATCAAGGAGCAGAGTGGATTGTGCCAGGAGACTCTGAGCTCCCTCTACAGGATGCTCTTGAGCACAGGCAGCCCAGTCCTTTATACAAGAATCGAATGGGAGTCGGATGAGATAGGCCCATCAGTGCAAACCATGACTCTGTGCTTGTTTCATGGGCATAAGGTTTGGGGCAGGGTGAACACATGTGGGGAACAGATAGATTGGCTGAGAATAGGGAGTACCTAATAGGAATAGGTGGGTCCTGAGATACCATTTGAAGCAAATTGTCCACCTGTAGGTACAAAAGTAAAAGACTGAAAATATTTACTAAATCAAAGAGATTTTTGCCCTAGGAAGGTTAACTAATAAGAGACTTTTTTTCCTAGGGTTTAAAAAATGTTAAATCACATTTTATGACAGTCAATTTTATATCCTAATGGAATCTCTTCTGGTAGTGAGAGAAGTTCCAGATTTTTCGTTGTAAAAATAGTCATATAATGGTCTAATATCCAGTTCTGTCACATTTTCTCATTACCTATCCCTCACAGGACTTTCCCTCAAGTCCCTACCTGTCCCCTCTGCCCCACACTCTGGCCCGGAGCCAGAGGATTGGCTCTGGGGCAGCAGGAACCTGTTGTTTTAG
Seq C2 exon
GAGATGGTGACCTTCGAGGATGTGGCTGTGCACTTCACCAAGACAGAATGGACTGGCCTTTCTCCTGCCCAGAGGGCCCTGTACAGAAGTGTGATGTTGGAGAATTTTGGGAACCTGACTGCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157429-ZNF19:NM_006961:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)