GgaINT0002603 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:22513335-22514088:-
Coord C1 exon
chrUn_random:22514020-22514088
Coord A exon
chrUn_random:22513462-22514019
Coord C2 exon
chrUn_random:22513335-22513461
Length
558 bp
Sequences
Splice sites
5' ss Seq
CAAGGAGGA
5' ss Score
-3.19
3' ss Seq
AGGAGCCTCTTTGCTTGCAGGAG
3' ss Score
6.37
Exon sequences
Seq C1 exon
GACATAACCTTAGAGAAGCTCACAAAGCTCCAAAGTAACCACAGGTCTTATACAGAAGATCTGTATCAA
Seq A exon
GGAGGAGTCTCGACATCAAGCTGTGAGGGATCTCTGTGCAGCTGTGACCTCGACAGCCATCCCTGCTCGAGGGCAGATCCTGTTGTGCAGCGCGCTGCTGTGCAGGAGAGCTCGAGGGCTGCTTTTGCTGCTCCCTGTTTTGGGGTGAGATGACCGACTACTTGCCTTGCTTTGTTTTTAGGCATGCAGTCCGTGTGCCCCCTGGGGGTCTGAGAGAGTGCTGGGCTGGGAAAGGGACTGCTGCGTTGCCTCCCAGCTGCCCTGCCCTTTCTCTTGTCCCTGCAGGCTCCTGTTCAACTTGTGCCTTCCAGGCGTGATCATCCCAGGCTGCAGGAGAGCAACAAATGGCCACAGCACATCGGTGTCAGGTAGGGGCTGTGGGAAGCAGGCAGGAGAGGCCAAGGGGCGAGGGATGTGAATGCAGGGGGAGAGGGAGGTGCCCTCAGCCAGCATGCGTGTGCTGGGGCCGGAGAAGCGGCTGGGACGGGAGTTTGTGTCGTGTGCGAGCTGCTTCCCTGGGCCTTGGCTGTTGCCAGCAAGGAGCCTCTTTGCTTGCAG
Seq C2 exon
GAGCCCGTGAGCTTTGCGGAGGTGGCCGTGTATTTCAGCAGGGAGGAGTGGGCGCTGCTGGACCCTGCGCAGCGAGCGCTCTACCGGGATGTGATGCTGGAGACGTACCAGTGCGTGGCCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022405:ENSGALT00000035986:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATAACCTTAGAGAAGCTCACA
R:
CAGGCCACGCACTGGTAC
Band lengths:
191-749
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]