BtaINT0165251 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016077 | ZNF317
Description
zinc finger protein 317 [Source:HGNC Symbol;Acc:HGNC:13507]
Coordinates
chr7:14743294-14743992:+
Coord C1 exon
chr7:14743294-14743436
Coord A exon
chr7:14743437-14743865
Coord C2 exon
chr7:14743866-14743992
Length
429 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAC
5' ss Score
7.48
3' ss Seq
AAATGTGTGTGGTGTTTCAGGAA
3' ss Score
8.49
Exon sequences
Seq C1 exon
CTATGCCCAGTCAGGAGCCTGCCTATATCCATGAGTCAGAAGTTCCTCTTTCTTCAAAAGACCATTCCTGTCCCCAGGATGTGGACCTGTTTGCATGCAATGGCCTGGAGCCTCATACATCAACCAGTGTTGAACCATCCCAG
Seq A exon
GTATACCAAGCTCTTTAAGACCCCTGAAGGTGGGGGAGGGTCTCATCTAGGCTGATGGATGCCTGATTAGAGTGCAAGAGGCAGAGCCAGAGAAGGTTGTGAGGTTGGTATCAGGGATGTTAGGGAAAATGACATGTAACAGGTTGTTTTTTCATCATACAGCTCAAAGCTCTCAGGCCAGGCTGGAAGTGAAAGGAGGTTTGATCCCATGTCAGAGTTGGATTTGAAGCAATGAGATAGGATGAAATTATCTTACAAGGAAGAGAAGACATCTAAGGACTGTCTTCTAAAATAAATGTTTAGACCTCAGAGCCCTGTATTGAAAATCCTGTGTTTAGAGTCTCTCACACGTAGTCTTTGTCCTCAGCCATCTGGATGAGTTCTCACTGGCTGGGTTCTCACTGACCCCAAATGTGTGTGGTGTTTCAG
Seq C2 exon
GAATCAGTGACTTTCCAGGATGTTGCTGTGGACTTCACTGAGAAGGAGTGGCCCTTGCTGGACTCTACTCAGAGAAAACTATACAAAGATGTGATGCTGGAGAACTACAGCAACCTTGCTTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016077:ENSBTAT00000021396:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=0.070
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTCAGGAGCCTGCCTATA
R:
AAGGTTGCTGTAGTTCTCCAGC
Band lengths:
254-683
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]