MmuINT0178968 @ mm9
Intron Retention
Gene
ENSMUSG00000057551 | Zfp317
Description
zinc finger protein 317 [Source:MGI Symbol;Acc:MGI:107775]
Coordinates
chr9:19446408-19447168:+
Coord C1 exon
chr9:19446408-19446547
Coord A exon
chr9:19446548-19447041
Coord C2 exon
chr9:19447042-19447168
Length
494 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
AAATGCGTATGTTATTCCAGGAG
3' ss Score
5.41
Exon sequences
Seq C1 exon
CTATGTCCTCTCTGGACTCTGCAGATAACCAGGAATCAGAATTTTCTCTTCCATCAAAATATGATTCTTGTCAGCAGAGTTTGGGTTTGTTTGCTTGCCATGCTCCAGAGCCTGATACACCAGCTCGTGTTTGTTCTCAG
Seq A exon
GTACATAAGATCACACGGCCCAAGGGTGGGACAAGTACGTTTTAGGACATCACCACCACCACTGTGTGTTGGTATTCTTGTAGATATTTATCCAGGTCAGTGAATGCCTGGTCAAGGAGCAGCACACCAAAGAAAGTCAGATGTCACTAATCATTATTACGGAAGTTAGAGGTTATTTGTGTAACAAGTGCTTCTTTCATGTTTGCATAGTGCTCAGAATCAACTTGTAGAGACAGAAAGGAAGTAAGGCTACAAGCTCTCAGCCACCCTAGACTTGGAAAGAAATTTTCTTCTTGTTGGTATTGTATTTGAAGCAATGAGACAGGTTAAGGTCAACTTAACACTGTCTGGAATATCCTTCTAACATATATACAGAAACCTTCAGCAGACCATATCTGGAAAAACCACATCATATCACTTGTGTCCATATTCTGCCTCTGTTGTCTTCCTATGAGCTGATTTCTCATTGGCCTCAAATGCGTATGTTATTCCAG
Seq C2 exon
GAGTCTGTGACATTTCAAGATATTGCTGTGGACTTTACTGAGAAAGAGTGGCCCCTGCTAGATTCTTCCCAGAGAAAACTGTACAAAGATGTAATGCTGGAGAATTATAGCAATCTAAGTTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057551-Zfp317:NM_172918:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTCTGGACTCTGCAGAT
R:
ACTTAGATTGCTATAATTCTCCAGCA
Band lengths:
255-749
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: