HsaINT0186827 @ hg38
Intron Retention
Gene
ENSG00000130803 | ZNF317
Description
zinc finger protein 317 [Source:HGNC Symbol;Acc:HGNC:13507]
Coordinates
chr19:9156612-9157394:+
Coord C1 exon
chr19:9156612-9156748
Coord A exon
chr19:9156749-9157267
Coord C2 exon
chr19:9157268-9157394
Length
519 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
3' ss Seq
AAGTTTGTGTGGCGTTCCAGGAA
3' ss Score
6.32
Exon sequences
Seq C1 exon
CCACGTCCACCCAGGATTCCACCTGTCTCCAGGACTCAGAATTTCCTGTTTCTTCAAAAGACCATTCCTGTCCCCAGAATTTGGACCTGTTCGTGTGCAGTGGTCTGGAGCCTCACACACCCAGTGTTGGTTCCCAG
Seq A exon
GTGCACTAAGATCTCTGGGTCCCTAGAGCAGGAGAGGCACTTCCTGGAAGACCCCACCAGTGCATGCTGGAATTCTTGCAGAGCTTCATCTCAGCCAGTGGATGCCAGAACAGGGCCCAAGAGAGAGCCAAGGAATATTGGGGCTGTCCTGGTGTTGGGGAAGTTAGGGGAAGTGATTTATGTAGCATCTGTTTCCCTCATGCTTGCAAAATCTCAGGCCCTTGCTCAGCCCCAGAGACGGGGGGAAATAAAGGGCAAAGCTCTCGGAGTGGGCTAGAACTGGAGGGAGATTAGTCCCTTGTCAGGGTTGCATCTGAAGTGACGGCACAGGACAAGATGGCCTCAATGGGGAGAGAGGATGTCTGAGGACTGATGCCTGGAGGAAATGTTGAGCCCCGTAGCAGGCCATCTGGAAATCCTGTGTTGGGTCTCTCATGCCCGGTCTTCAACCTCAGCCATCTTACCATGAACATCGTTAGGCTGGTTCCTCGCTGACCCCAAGTTTGTGTGGCGTTCCAG
Seq C2 exon
GAATCGGTGACTTTCCAAGATGTCGCTGTGGACTTTACCGAGAAGGAGTGGCCCTTGCTGGATTCTTCTCAGAGAAAACTGTACAAAGATGTAATGCTGGAGAACTACAGCAACCTCACTTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130803:ENST00000247956:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.101 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCCAGGATTCCACCT
R:
CCAGTGAAGTGAGGTTGCTGT
Band lengths:
259-778
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains