HsaINT0186399 @ hg19
Intron Retention
Gene
ENSG00000186448 | ZNF197
Description
zinc finger protein 197 [Source:HGNC Symbol;Acc:12988]
Coordinates
chr3:44670566-44672713:+
Coord C1 exon
chr3:44670566-44671036
Coord A exon
chr3:44671037-44672553
Coord C2 exon
chr3:44672554-44672713
Length
1517 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
3' ss Seq
CTTATTTTACTTGTTTCCAGGTT
3' ss Score
9.03
Exon sequences
Seq C1 exon
ATGATACTCTCCAAGCTGTAAGGAAGAAGTCAAGGATTAAGGAGACCTGGACTGGAGAGGAGCCTTTTTCAAAAAACAACAATGACAAGAGAAAATGTAGCCCACAATGCTCTGAGACAAGAGGGCCTTGTGAAGGGGAAGGATGATACCTGGAAATGGGGAACCAGCTTCCAAGGAAGTAGCTCCTCTGTTTGGGAGACCTCCCACCTACACTTTAGACAATTACGTTACCATGAGACATCTGGACCCCAGGAAGCCCTGAGCCGGCTCAGGGAACTCTGTCGCCGGTGGCTGAGACCAGAAGCACGCACCAAGGCACAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTTCTGAGCATCCTGCCTGGGGAGATTCGGACCTGGGTACAGCTCCATCACCCTGGAAGTGGCGAGGAGGCTGTGGCCCTGGTAGAGGAGCTGCAGAAAGACCTTGATGGACCAGCAATACAA
Seq A exon
GTGAGAAAGACAGGGAGGGGCGGTGGGTGTTGGGATGAAAGGAAGGAAAGAATTGAGGCTAGGCTAGAGGGTGATCCTGTGATTTTCATTAAAAATTAATAGCATTAATAGCACACTAGCAACCTTAATGATAATTAAAGCAGGTCCATGAGTATTCAGACCATAGAATATGTCTGTAGAGAAACGGATTTACGTTGAGGTCTTCGGGTCCAACTGAGAAGCAGCATAAAAACATTGACTGTTTTGTCCCTTGGGTAATGCTTGCTAATGCTGAGTTTGGACCAAGAACCTGAAGAAGAAATGTTAATAAGTTTTTCCCTAAACAGAAGCCTATGTATTGTTTCTATAATTCTGTTTGGAATGGTGATGTAAGCCTAGAGTATAAAAGGCAATAGCAGGCCAGGCACAGTGGCTCATGCCACAGCATTTTGGGAGGCTGAGGTGGGAGGATCATTTGAGGCCAGGAGTTCAAGACCAGCCTGGACAACATGGGAAGACCCCATCTCTACAAAAAATTTAAAAATTAGCCAGATGTAGTGGCGAGTGCCTATAGTCCCAGCTACTTAGAAGGCTGAGGTGGGAGGATCACTTGAACCCAGGAGGTTGAGGCAGCAGTGAGCTATGATTACACCATTGCACTCCAGCCTGGGTGATGGAGTGAGATCCTGTCTTTAAATAAATAAATAAATAAAATGGCAGTAGCATAACAAGAATGAAGCTTTCCACATCTTGGTAAGATCTCCTCTTGTGTGCCCTACTAGGGATCTGCAAGCCAAGGGATTGGGTTAAGATATTTGCTTCTGATAAGATTTATATCCTTGACCATTAGATTGGGATCTTAATGTAGCCTCTCATGTGTGTGAGATTTCTTTTTGTACATCTGTAGCTCACTAGAAACATTTCTGTATAAGACGTCTGAATCATAACTCAAACTTGGGTGTGGCATTAAGGATGGGCTTGTTTCTTTTAATAATAACGTGAACAATTTTAGAGCTATATATTTCGTTACAAATTACTAATACATCCTCATTTGAGAGATAAGGAAACTGAGGCAGATGTCTAGCTGGCCGCAAAACCAAGTGTCTTGGTGCCAATTTTAGTGTTAGTTGTATTTGAGCACAAAGGGCTAGGTAAAGGGGTCAATAAGTAGATGGTAAATAAGTAGAAGAGATGTGACTGAAGTCCGATCTAAAACTTAAGTCTGAAGCTAAAATCCATGCTCTTAATTACTGCTTATTACTTCCCATTCCCTCCTTAACCCACACCCAGGTCTGGCTTCTGTTCCCACCGTTGTGTACAGTCTCCTCTGGGAGAGGTCACCAGTGCCATGAGTGGGGCTCGAGGGCAGCTCCATTGTTCTCAATGCAAAGCTTTACTGCTGTTTTGATGCTCCATACTTGAGGTGGGTCTCTCTGATCTCACAGTTGTAGATTGTGGGCAGAAAGAGGTCCACAGTGCTTAGGTGAGTCCATTTTCTTAAGAAACAAGAAGAGCTAGCTTATTTTACTTGTTTCCAG
Seq C2 exon
GTTCCAGTCCTTGTCAAGGATCAGGACACTCTCCAGAAGGTGGTGAGTGCCCCAGGAACAACACTTCCTCCTGTACTTCCTGGCAGCCACATAGCAGCTGAAATTTGCCCGCATCCTCCTACTGACCTAGTGGCATTCAACCTCCAGGATCCTCAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186448-ZNF197:NM_006991:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.231
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=72.3)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGAGACATCTGGACCCCA
R:
GATGCGGGCAAATTTCAGCTG
Band lengths:
356-1873
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)