HsaINT0186514 @ hg19
Intron Retention
Gene
ENSG00000167377 | ZNF23
Description
zinc finger protein 23 (KOX 16) [Source:HGNC Symbol;Acc:13023]
Coordinates
chr16:71490667-71496117:-
Coord C1 exon
chr16:71495562-71496117
Coord A exon
chr16:71490732-71495561
Coord C2 exon
chr16:71490667-71490731
Length
4830 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
CTCTTTGTGTTTCTCCTTAGCTC
3' ss Score
10.43
Exon sequences
Seq C1 exon
CGGAGGTGAGTGCAGGGCTCCGGGCGCTGTGTGCCGTGCCCTGTCCCCCAGGCTCTGGGTCCGGTTGAGACGCACTCCCACCCTGGGTGCTGCAGGGTCTCCCGTGGCCTACGCTGCCAGGAGGCCCAGGCTGGGAGAGGGAGCAGGGCGGCGGCCCGGGGTGCTCTTCCGCGCTCCTCGACTCCAGCTTTGGTCTTTGTGGCTCAATAGCTTGCGCCCATTGGAAGGGGAAACGCACGTTGCTGTCCCAGCCACGAGGCCCTGAGCATTTAGCACTTGGTCGACGGGGGAAGATGTGTCGGTGCAGCTAAAAGATGGAATATTTGCGGGCGTGAAGCGGCCCGAGGTGATACCACAAGTCTTTTGACATGCTGAGGTCTGGCAGGAACATTAACCTATGTGCATCCCGAGTATGGACCGTGTGCTCCCAGGCTCCTGACATAGGGTCATGAATTAGGGCCGAGTGGGAGCGCAGAGCCCCTCCCAGTCACCCGGCAGCAGAAGCAGCCCGGCTTTTGGAGGACATTGTCTCCTGGAGCAGTGTCAGTCCCAAAAG
Seq A exon
GTAACTCAGCCCTGCTTCTCTCGGCTCAGGGTTGACAGTGACCTGGGAATGACTTCTACAACGTAATTACGAATTCACTCAGTTTTAGAATATATTTAGTAGTCTCAGAATCGCTAATTCATACCCCCATGAAAAGCAAATTTACTACCTAAAGTACAGTACTTGGATACAGGTCTTTTTGTCTTTACTCTTATGGTATTTAGTCAAAATACTGTTTTCCAAAGTTGCTTACCCCTTTTCTTTCCTACCACTTAAGTGTGGTTATGTTCACTGTAGTATAGTTAAGCACATTGGCTGTTCTTTGTATTACATTTTGGGTCCTCAATTTCACCCCATCCTTGCTGGTTTATATATTTATTTAAAATATATATTTATATGTTACATATATAGTAGTAAACATCCATGAACACACCACCCAATTAAGAAAGAGAAGATTGCCAGTACTGCTGAATTTATCAATGTGTTCCTCCTCCTCAACCCAACTCCCAGCCTCCAACCCCTAGAGGTAACAGTTATATTGACTTTTGTGTTAATTGTAGCCCTGTTATTTTAAAAAATAATTACATATGCATGTATCTGTAAGCAATGTACTTAAATTTTTTTTTTGAGCTTCATATAAATGGCACCATTGTGTGTATAAGTCATCTGGGACTCGCATAATTCAATGTTAAGTTTCCAAATTCATTCTGTGTGTAGCTTCTGGGTAATGTTCCATTGTAAAAACTGTATGAAAATTTATCGATGTATTTTCAATGGACATGTGGGTTGTTTTCAGTGTTTTGTTATTAAAATGTGCTGATAATATTTTTGTACGTACTTCCTACATATGAGAGTTTCTCTAGTGTGTAAGTTTTTAAAATTAGGCACAAATGTTGAATTATGTTAAACATCTTTGGCATCTGTTGAGATGGACAGTGTGTTTATCTTTCTTTGATTTATTAATGTGAAAAATATACTAATTAGTATCTTCGTGGGATAATCCTACTTACTCATGATGTATTTAATGAACTATTGGAGTCTATTCCTTGATAGAATTTTTGCATTAGAATTCATAAATGAGACTGGTCTGTAGTTTTTGCATCAGTATTGTGCTGGCACCATAAAAAGAATTGGGAAACTTACTTTGCTGTGCTCTGCTACGGTTTACATAGTGTTAGAATTACTCATTTCCGAAACATTGAAAGAATTTGCTCATGACACATCTGAGCTCAGTGTTTTGTGAGAGTTAGTTCTTCACTGGCCATCTTGGTTTAATTAGGTAAAAGTAATCAAGGATTATGTAGAAAATCTATATAATGTCATAACAGGAAAAAACCTGGAATCGTATTTAAAAAAAAAAACTATCCCCTTGGGAGGGAGCCAAGAGACCAAAGAATGCCTTGGACGAGTCCAGCTTGGCAAGTAGATGAGTTTATTAGGACTTACATACTTACTCCTGGATGGCAGCAGGACAGCTTTAGAGACCTGTGATGCCCCTCGTCTCTAAGTACTTTTTAGAGAATTTTCTGGCTGTTTGCCTACTGCATTTAAACGATGAGACTTTTCTTGGTAGGTTCTCATATACTTTCTAGGATGTTTACGTTCTTGCAAACACCTGCTCCTCTGCTGAGCCCCATGGTCTTGACTCACTGCCCGGTCTTCAAGGTTCAGGCAGCAGGTATACACCCTTGACTAGCTGAGCGGGGTAGCTATCACACTACATATGTAATTGGTAGAGTTGGTTTATTATCTAAAAATGGAGTTGTATATTCTCCCATCACAGAATAAGTTTTCTCTTTAAACACCAGATAATATATTTTTTTAAATGGACATGAGTCACAAAAAAACCCTGAAAAATGTGTAAAGTAGAAGTTAGTAGATTGGGTTATATAACCATCATGCAATAAAGCCAGAACTTATAAACAGAAGAAATTAGCAACAGTAAACTATCCTAAGCAATTACTAGGTCAGAGACAAAACAGAATTGCTGACTGACTATAAAACAGTAATTAAAACATGAAATATAAAAACCTCTGGAATGTGGCAAATAGTGTATCCCAAGGAAAATTTGTGGCCTTATAGGCTTTAATTGCCAAATAGGAAGAATGAAAATAAATGAATAAGTCATGCAACCTCAAGAAGGTGGGAAAAAAGCCTTTTGTAGTCTAAGCTTCCCCAAAAGCAGAACGTGGAACAAAGATTTGTATGTAGGAATTTATTTAGGAATATGGTCACAGGGGCAGAGTGAAAGACAAGGGGAGTGAAACAGAGATGGGAGAACTGGTACAAGGATGCATTGGTATGCTCGGCCCTCAACAGGCTCTGCCTTGCAGGGCGTTTGAGGAGCCTTGGAGTCTTAAGGCTGCCCCGCTGGGGGATCGACGGGGAAAACATTTATCCATTGGTTTCTCTCCCCTATTGGTCAAGGGGGTCCCACAGGTGTTAATGCCTCTGCACTTCAGGGCCCAGCAGGTGTCCACAGGTGTCCCACATAGGACACCAGAGAAGCCCCAGGGCAGGAACCAGGCATAGGTGATGTAGGTCCTTGTGAAGGTTCTGGTAGCTTGCAGCTTCACAAAGCTGACTAACCTCTGTAGAACTGGACTGAGGATGGGATAAGAGGATTGGAGTGGTGCTTACACTGCCCCTTACAGAGCTGAAGGAACAAACTAAGAGCAGAATTAGTGAATTTAAAACAAATAGAAGAAAGTAGTGTTGCTCAACTAGAAAAGCTGGTTCTTTGAAAATAAAAGGAAACCACATTAAAATAAGTAAAACACTGCTCAGCCTAACTGTATTAGTCTGCTTGGGCTGCCATAACAAAATACCATAGACTGGGTGGCTTCACCAACATACTTATTTCTCACAGTCCTGGAGACTGGAAGTCCAGGATCAAGGTGCCAGCTGATTTTGGCTCCTGCCAGGGTTGCCTTCCTGGCTTATAGATAGTAGCCCTCTCGTTGTGTCCTCACATGGGGGAGGCGGGGAGTGAGTGGTTTCGTGGGCTCTGGGTCTCTCCTTCTTCTTGTAAAGGCATCACCCCTATTGGACCTCATTTAACCTTAGGACCTTTAGTCCCACCCTTAGGACCTCATTTATCCTTGTAACCTCCTGACAGGCCCCGTCTCCATATACAGTCACATTGGAGGCTAGAGCTTCAACATATGAATTTGGCAGGGGCATAAATGTTTAGTCTCTAACTCTAACCCTGGGAAAAAGGTCTAGAAAGCACATATATTCAAAAGAAGAAGTGGGAAAAGCAAACTAGCTCTGGATATGGAGGAAATGGAAAGAATCATGAACCAGTATTTTCTGCAACTCTGTACTAGTAAAGTTGAAATCCTGGAAGAAATGGATGATATTTTAGGAAAATGTAATTTCAAGACTGACTTTAGGGGCAGTAAAAGTCAGAAAATCACTAGTCCATATGTTTTTGAATACAGTGAACAAGAGGCTCTGGGTCACGGGACTGGCTGCTACAGTGATCTCCTCTCTCAGGAGCTGACGCAGAAGTGTAGGCCTTGGCTCATTCACTATCAGAAGACTGGAAAGTTTGGGAAACAGCCTGGTTCCTAACTTCCAGCTCAGCTTCCTAAGGACAGCCTGTGCTGTCCTTAGGAGGACTGACCTCTCAAGACCTCTCCAGAGGTGTTAGGATTCTTGAGGACATTCAGAGCTCTGAGGAAGTGGGGCAGGATACTGGGGGGCAGCTGCCTTCTCCAGGCGCTGCCTCCCTGGGGTCTGACTCCCCAGGCTTGTGTACTGGGGCTGCAGCCCAGCCAGTCCAGCTTCTCCTGCTGTGATACTGAAGATAATGCTTGTGTTGAGAAAGAGAAATAAGTCAAAGATCTTGGTATTGTCCTATTTCTTGAAATGAATTGTGGATACATGACTCTTTGCTTTATTTTTTAGGCTCTGCATACATTTTATTTTATTTTTATTTTTTATTTTTTTGAGATAGCGTCTCACTCTCATCACCCAGGCTGGAGTGCAGTGGTGTGATACTGGCTCACTGCAGCCTTGACCTCCCGGGCTCAAGTGATCCTCCTACCTCAGACTCCCGAATAGCTGGGACCACAGGCATGTGTCACCACCTCTGGCTAATTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAAGCTCTGCCTCCCGGGTTCACACCATTCTCCTGCCTCTGCCACCCGAGTAGCTGGGACTACAGGCGCCCGCCAGCACGCCCGGCTAATTTTTATATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTTGTGATCCACCCGCCCTGGCCTCCCAAAGTGCTGGGATTACAGGCTTGAGCCACCGCGCCCAGCCTAATTTTTGTATTTTTTATAGAGACAGGGTTTTGCCATGTGTCCAGGCTGGTCTCGAACTCCTGAGCTCAAGTGATCCACCCGCCTTGGCCTCTCAAACTGTTGGGATTATAGGCACGAGCCACCGTGCCCAGCAGGTTTTATATGCACTCTTCTTCTTCTTTTTATTTTTAATTTTTATTTGTTTATTTTTAAATTTTATATATATACTCTTCAGTGTGTGTGATATGTATCAGAATTGTAAAGTCCTAGGGTTCCTGGCAGTGAATTTCAGTGTCATAGCCTGGAGTCCTAGGCACTGAGCCAGTGAACAGATCATTCCCTTCTTGGGCAGCTCCTGTTCGCACTCCTATTTGGATGCAAGCTGCCTGTGTCTTGCATTTTCTGTGAGGGGCTATGTTGCTCTGGTTGGGGTGGCTTGCCTCACACTTGTCTCTCTTTGTGTTTCTCCTTAG
Seq C2 exon
CTCCAGCCCTTCTCTGAGACGGGGACCAGGGGATGGCAGCCATGCACCTGACAGCCTGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167377-ZNF23:NM_145911:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)