MmuINT0179572 @ mm9
Intron Retention
Gene
ENSMUSG00000044676 | Zfp612
Description
zinc finger protein 612 [Source:MGI Symbol;Acc:MGI:2443465]
Coordinates
chr8:112603634-112606642:+
Coord C1 exon
chr8:112603634-112603904
Coord A exon
chr8:112603905-112606577
Coord C2 exon
chr8:112606578-112606642
Length
2673 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CCCACCCTGTTTCTTCTCAGCTC
3' ss Score
8.98
Exon sequences
Seq C1 exon
GGACCGTGCTGCGCAGGTGAGTGCGGACCCATTGCGGTTCGCGGTGTGTCTTGGCGGACAGCACGCAGGGGCTCCCGCAGCCAGCCTCGCGGGCCACCAAGTCTCCGTGTCCACAGCGGTGACGCTTGAGTGGCGACCATTGTCAGACCCAGAAAACTCAGCAGGTGGCGGATCGGGGAAGCTGTGTCACTTCACAGAGGGGTAGCTGCGTGCGGGGGCGAAGCGGCTCGAGGTGACATCGCAGGTCTCTTGACCCGCCGCGGCCCTGCAG
Seq A exon
GTGTGTACTGCTTGTCCCGGGCTCCAGGCAGGGTGAAGGGCGCGGGGCCACCGCAGGGAAAGCAGGGCCACTTCTCAGCCGTTGGGGACAGAGCGAGCTTAAGGCCTGGTCTGCTGCATCGACGTCAGGCCCCACACATGCACACAAGATGACGACATGGCAAGAGTACACACAGACTAGTTTCAGAATTGCTGCTATTTCATACCCCGTAGAAGGCAGTGCGACATTTGGATGGATGCAGGTCTCTTACGGCTATAACCGTAGCCAAAACACTTATTTTTCCAAGGTGGGGAGCAGGGAGAGACAGAGACAGAGATAGACACAGAGAAAGAGTTTTAAGAGAAAGAAAAGTAACGGATGCTTACCTATGCGCAGCCAGATAAGAACGAATCTGGTCCTTATGCTGCATCCATCAGTGTATTCGTTCTTCATCTGACTCTCAGACTCTTCCCACCCTCAGATGTAACAACTATTTTGAATTTTGTGTTTACCACAGCCTATTTTTTTAAAAGTGTATACATATGCAACAGTTTAAGCTTTGTTGTTGTTGTTGTTTTTGAGTACTTGGTTAATTTCTAAGTAGTGTCTATGTCAGCTGGGTAAGGTCCAGCTATAAAAACAATACAGAAGCTGTATTTTCAGGGGATGGGTAGGTTGTTTTCAGGCTGGTTATGCATCACAAATAGTGCTGACGATGGATACTTTGTGCATGTCTCCTACACATGAGAATATCCATAGGAATACATTTTTCAAGCTTTTTTATTCACAGGCAATTTTCATACAAATGTAGAATGCATTTGATTCATTTCACACCCCCCCTTCCTGGGCACCCCCTTTGTAGACATTTTTAAGATTTGATGTGGATATAGAGTTTTCCAAACACATTTGGCATCGAGTGTTCCTGGTCAAGGGTTAATTCTGAGCCAGAGGAAAATTTACAGCCTGATAGTTTTTTAATTGCCAAATAAGTCATAATGAAAATGGCTGGGGAAACTCCTGCAATTTGAAGAGGTAGAAACATTTAAAAATCCTTTTGTAGTCTAGGTTTTTCAAGATGTAGAACGTAGGACAAAGGGTTTTGTTTTGTTTTGTTTGTGGGAATTTAGCTATGAGTAGAATATAGTCGCCTGGACAGAGTGAAGGACAAAGATAGCAAAATAGAAAAAAAATATAGACAAATTAAATATAACAGTTCAGTTGGGCAAAGAATGATTGACACCACAACAACTTGTAAGACTGGGGATGCCATGGGGCTGGGTATTTATAGACAGGAGAAGACCTGTACTGAAGAGCTAGCTCAGTTGGCTTGTGCCTGGAGCTTGCCTTATTTGAACCTAGTTTGATCAGCCTGGCCACTATGATTGGCTGAGACTCAGTTCTGAAGTTAGGTTTTGAATGTGTTTATATACTGAGTTAGGTTGCAATTCTCTACAGGTCAGGACTCTGGTATATGAGTCAGAAGGCTTTCTTAGGCCAATTTAGTTTGCTTTAATAAAGTGCATACAAGGTTGCCTTACCAGCTTTGGCCCTCAACAGGTTCTGTCTTGCAGGGTCTCTGAGGAGCCTTGGAATCTCAAAAGATGTCCTTCTAGGGTTAATGGGAAAAGCACTTACCTATCAAATCCTGCCCCCTGATGGTCAAGGGCGGCCTCATAGATGTTTATTTGCCTGCAGTCTGCTACAACAGGCATCTTAGAATATGGGAGAAGCCAGACAGCAGGAATGATGTAGATGTGGTATAAGTCCTTGTGAAGGTTGCTTACAGCTTTGTAAAGCTGGTCTCTGCCTAGGAGAACTGCAGAAAGCCTCCACTTGGCATAGCTGATCCAAAGTGGACAGGTTAGCTCGAGAACTGAAAGGCAGCCTGATACCTCTCTTATTTTAGCCAAGCTTTCTCAAGGTTAGCTTAGGCCATGGATGAGACCTGCACAAAAGCCTTAGGGTTCATTTGTTTCTTTGTGTGCATCCCCCCCCCCCTCCTTCCCCCATGGTTTGTTGAGACAGGATTCCTGTGTGGTTCAAAGTAGCCTTGAACTTTGAATTCCGGAGCTTTCTGCCCTGGCCTCCTGAGTGCCGGGGTTACAAGTAGGCACTGTTATGCCCTGGATTCATCAGGGTCCTTCTGTTGTTTTGGGGCAGGGTCTTTTGCAGCCCAGGCTGGCCTCCACCTCTGATCCTCGCCCCCCAGCTCCATCCCTCCTGGCAAGCGTGAGGATTCTTGACACCAAGAAGGCTCGAACTGGCAGGCAGAGGGGCAGCCGCCTCCTATCTATGTGGTATTCCTGCAGCCTGACTCCCAGACCTGACCCAGCCGGCCTGTCCTGCGCTGTCATTGCAAATGATGCTCAGTTGCAGACAGAGAAATGAGTTAGGGTTGATAATGTTCTCCCTAGAACTGAATCCTCTCGTCCTGGTCTGTTATCCTTTAGGCTCTGCCTAAGTTTTATAAATACTTTTATATGATGCTTGTAAGAACTGCCAAATCACAGGCTTCTTGGCAGCCAACTTGAGAGCATCAGTGTCCTACCTGGGAAGGACACCTGGAACCAGTGAGGGGTCGCTCCATCTTCTTTGGCAGCTCCTGTTCCTGTCTGGGAACCAACTCAGATCTTAACTATGCTCCTGATTGGGATGGCTCACCTTACACCCCTCCCCCACCCTGTTTCTTCTCAG
Seq C2 exon
CTCCAGTCCTTCCTTGAGAGGGAGACCAGGTGACAGCAGCCATGATCCCATCGGTTTGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044676-Zfp612:NM_175480:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: