HsaINT0186519 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr19:44507077-44511245:+
Coord C1 exon
chr19:44507077-44507259
Coord A exon
chr19:44507260-44511162
Coord C2 exon
chr19:44511163-44511245
Length
3903 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGG
5' ss Score
3.53
3' ss Seq
CTGTCTCTGGCATTTTCCAGGCA
3' ss Score
9.08
Exon sequences
Seq C1 exon
AGACGCTCTGTGGAGACGCGAGCACTTCCGGTGTGTGAGCCTGCGGTTGCTACATAACCGCGTAGTTTGAGCCATTTCTGCGTCTGGCGGGTCCTTCTGAACTTGTCACCTTCGCTTGGGGTCGCAACGACCCGATGATCGATGATCCAAGCAAGGGAAAAGAAGCCTTGGCGGAGAGCGGAG
Seq A exon
GTTTGGTGGGGGCGGGGAATGGGGTTTTTTTCCCGTCCACGGAAGCTTTCTGGGATGGGGGTGCTGTGCTCGCATCCCGGGGGTTGGAATTGGCGGGGTCCTCTGTGCCCTGCTGTGAGCGTTTCCAGGACTTTGACCTCGCTCAGCCTGCCTCTCTCCACCCTACCTGTGCGACCGCTTTCTCGCAGTGTGACGTGGAGTGTTACTCAATGTCCTTATACTTTCCATTGCTGTTTTTGGTAATGGGGACATTAGAACCATCCTAGTAGAATCGTTTTTGGGAACTGAAAGAGATAACGCAAATGAGAACCTTAAAGCAGTCCCTGTCACTTGGTGACTGGTGGTCTCTTGTTAACTTCCCGAAGAGGTCAGGTCCCCGGGTGGAGTCATAGCTTCAGCTGCAGGGGCCCTGGTCCTTCTCCCTAATCCCTGCAGGACGCTGGATGATCCCGGGAGGCCTTCTGACCTCTTTTTAGGAAAGCGAGTTGCGTCCGCTTCCACGAAGGGCGGGGAGCATTTAACTTTTATGGGGGACCGCGATGCAGTCAGGGTATTTCACAACTTTCGCCTTCCCCAGCCTGACCTTTCTAAAAGAGCTGCAGGGAGGGGACTTCTTGGCTACTGAGGGCAAATCTCTATGTGATTGGTCCTTGGCTTTTTTCCTTTATAGAGATGTTCACCCAACCGAGAGTGTGTCCTCGGGAATGGGTGTTGATAATCATTAAGCCGTAATTGGTAACTTCATTCTAAGTGCTTTATACAAATAAATTTAGGCCACACTGTGGCTCTGTGAAGTATTGCTTTTCTTTGTTTTAAAAATGAGAGTGAGACACAGGGTGCATAGCAGCCAACTAGTGAGAGGTAGAGCTGGGGTTGGCACCTAGGCAGTCCAGGTCAGAGCCTGAGTTGATCACCTCTTGGATACATTCTCATTGAGGCAGAGGAACTAGCTGGACTCGTAGGGAAAGCAAGTTAGGACCTGATTGAAAGGACGTTGAGAGCAAGGCTCGTGGGCTTGGACGTCTAGGAATTTTTAAAAATTTCTCAACTATTTTGTTTCATGTTTTCCAAGTATTTCGTACTGTTGTGGAACTGTATCATTGTGGAAAAGTCTGAAATAGGAGAAATGAGAGTAGAAAAAGTTTTTTAATTACCCATGTATCCAAGATGTAAAGGTAGTAACTGTTAAGCTTCTAATTGATTTCTTTTGTCTTTCTTTGTGTCTACTTCTATATTTGTTGATAAACATTTTTTTAAAAATTGTTATATTTTAATGTGTTTTCCCATATGTCTTTTAACTATAGAAAATTTTAAATATTGCTAATAGAGACTAAACTAGTGAGGCTGGTTGTGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACTTGAGGTCAGTAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACCAAAAATACAAATATTAGCCGGGCGTGATGGCACGTGCCTGTAGTCCCAGCTACTCTAGAGGCTGAGGCAGGAGAATTGCTTAAACCCGGGAGGTGGAGGTTGCAGTGAGCCAAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCAAAAAAAAAAAAAAAAAAAAGAATAAACTAGTGAACTGCCATATTATATAATGCTCAATTTTATTATTCCCATTATCCTTATGACTATTTCCTGATATCTAAAATATTTTTGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAAAAAAAATACAAAAAATTAGCTGGGCATGGTGGCAGGCAGTTGTGGTCCCAGCTACTCCAGAGGCTGAGGCAGGAGAAAGGCGTGAGCCCGGGAGGCGGAGCTTGCAGTGAGCGAGATCGCGCCACTGCACTCCAGCCTGGGCTAGGGAGCGAGACTCTGTCTCAAAAAAAAAAAAATTAAAAACTAAAAACAAAATAAAATATTTTCATCTTTATATCATTTAAAAGCTATAGAAAAGTTGCAAAAATAGTATAAGGAGTTCTCATACTCTATCCAAATTTGCCAATTGTTTACATTTTTCCTGGTTGCTTTGTTGATGACCATCAGCCAAATACCACCAGGAACATAACTAACCAGAGACAGCTGATTATGGCTTTCTGCAGCAAGGAAGCCCACATACCATGGTAAATGTGGGGTGTGTTGGTAAGAGGTATTTAAGAAGGGATGGTATAGGGTTTCACATAACATGCTAGATAATATTAGATATTAAATAATATTGTTATCTATTACATATCAGATCTGTTAAAAGACTACTAGTAGTTGTAGTGTTACTCATTAGATAGTGTTGAATAGCATATTACCTAACATCCTGTTATCTAATCTGTAGTTACATATTTAAATTTGTTCAGTTTTTCATTTAAAGTCCTATGCCAGGCACAGTGGCTCATGCCTGTAATCCCAGCATTTTGGGAGGCAACGGCGGGTGGATCTCCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGACACCTTGTCTCTACTAAAAATATTTTTAAAAGCCGGGTGTGGTGGCATGCTCCTGTAATCCCTGCTACTTGGGAGGCTAAGGCAAGAGAATCACCTGAACCCAGCAGGCGGAGGTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCATGGGTGACAGAGCGAGACTCTGTCTCAAAAAATAAAAAAATAAAGTCCTTATGACTGTGTCCCCTACCCCACCCTTCACCTGCAATGCCATTCAAAGTCCAGTTTATGCATTGTCTTTAGTTGTCACATTCCACAGTTTCTTTAGTCTAGAAAGATTCCACAGTCTTTGTCTTTTATAAACATGGTGGTTTTTTTTTTAATAGGAAAGTTATTTTGGAGAAAGATGTTCATTTGGAGTTTGATATATTTCATGTTTAGTTTCAGATTATGTATTGTTGGTAAGGATATTGCACAAGTGATGAGGTTTCCTCTTTATTGCAACATAACAGGGTTCACATGATGTGGTTTGTCCCTTCACTGGTGATCTCAACTGTGTTCACTTGGCCAAGATGATGCCTTTCAGATTTGTCCGCTGTAAAGTTACCTTTTTTAAAAAAACTCAAGTTTCTTATTGGAAGGTACATTATTAGTGGGCATTCTACTAAAGATGAACTTCTAGTTCTCTTCATTTATTCATTTGTTTGTTCAAGTATAAATCTCCCAACAATATGGACTCAGAATTCAGTCTTATGAAGGTAAATGACATGTGGATTAGCAATTTTTTTTCAACTCTATTGAGGTATATTTTACATAAAGCATTCACTCATTTCAGGAGTACAGTGATCTTTAGGAACTTTGTAAAGTGGAGTAACCATCATCATAATTCAGTTTAGTTATTTTTCACCCTCAGTTGGACTCTGTGCCCATTTACAATTAAACCTCATTCTCACCCCAAATCTGGAGCAACCACTAACCTACTTTTCCTCTATGTATACATTTGCCTATTCGGACATTTCATATAAATGGAATCATCTAATCCATGGATTTTGGTGACTGGCTTCTTTCTCTTATGATGTTTCCAAGGTTTGTGCATGTTGTAGCATGGGTTGGTACTTCATTCCTTTTAATTTCCAAATTAGATTCCATTATATGGATATGCCATGATTTTTCTATCCATTTACCCAGAGGAAGGCATTTTGGTTGTGCACAGTTTTGGGGTTAGTATGAATAATGCTGCTGTGATCATTCATAATACATGTGCTTGTTGCTACACAGCCTCCCCAGCCACCATTTCATGTCTCTCTTTTGCTGTCTCTGGCATTTTCCAG
Seq C2 exon
GCACAATTCCACCTTCCTTTGTGCTCCATTACTCAAGACACTGAAGACTCCAAAAAGTAGTAGGAAAAATGACCACATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
-ZNF230:NM_006300:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)