HsaINT0186519 @ hg38
Intron Retention
Gene
ENSG00000159882 | ZNF230
Description
zinc finger protein 230 [Source:HGNC Symbol;Acc:HGNC:13024]
Coordinates
chr19:44002948-44007093:+
Coord C1 exon
chr19:44002948-44003107
Coord A exon
chr19:44003108-44007010
Coord C2 exon
chr19:44007011-44007093
Length
3903 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGG
5' ss Score
3.53
3' ss Seq
CTGTCTCTGGCATTTTCCAGGCA
3' ss Score
9.08
Exon sequences
Seq C1 exon
ACTTCCGGTGTGTGAGCCTGCGGTTGCTACATAACCGCGTAGTTTGAGCCATTTCTGCGTCTGGCGGGTCCTTCTGAACTTGTCACCTTCGCTTGGGGTCGCAACGACCCGATGATCGATGATCCAAGCAAGGGAAAAGAAGCCTTGGCGGAGAGCGGAG
Seq A exon
GTTTGGTGGGGGCGGGGAATGGGGTTTTTTTCCCGTCCACGGAAGCTTTCTGGGATGGGGGTGCTGTGCTCGCATCCCGGGGGTTGGAATTGGCGGGGTCCTCTGTGCCCTGCTGTGAGCGTTTCCAGGACTTTGACCTCGCTCAGCCTGCCTCTCTCCACCCTACCTGTGCGACCGCTTTCTCGCAGTGTGACGTGGAGTGTTACTCAATGTCCTTATACTTTCCATTGCTGTTTTTGGTAATGGGGACATTAGAACCATCCTAGTAGAATCGTTTTTGGGAACTGAAAGAGATAACGCAAATGAGAACCTTAAAGCAGTCCCTGTCACTTGGTGACTGGTGGTCTCTTGTTAACTTCCCGAAGAGGTCAGGTCCCCGGGTGGAGTCATAGCTTCAGCTGCAGGGGCCCTGGTCCTTCTCCCTAATCCCTGCAGGACGCTGGATGATCCCGGGAGGCCTTCTGACCTCTTTTTAGGAAAGCGAGTTGCGTCCGCTTCCACGAAGGGCGGGGAGCATTTAACTTTTATGGGGGACCGCGATGCAGTCAGGGTATTTCACAACTTTCGCCTTCCCCAGCCTGACCTTTCTAAAAGAGCTGCAGGGAGGGGACTTCTTGGCTACTGAGGGCAAATCTCTATGTGATTGGTCCTTGGCTTTTTTCCTTTATAGAGATGTTCACCCAACCGAGAGTGTGTCCTCGGGAATGGGTGTTGATAATCATTAAGCCGTAATTGGTAACTTCATTCTAAGTGCTTTATACAAATAAATTTAGGCCACACTGTGGCTCTGTGAAGTATTGCTTTTCTTTGTTTTAAAAATGAGAGTGAGACACAGGGTGCATAGCAGCCAACTAGTGAGAGGTAGAGCTGGGGTTGGCACCTAGGCAGTCCAGGTCAGAGCCTGAGTTGATCACCTCTTGGATACATTCTCATTGAGGCAGAGGAACTAGCTGGACTCGTAGGGAAAGCAAGTTAGGACCTGATTGAAAGGACGTTGAGAGCAAGGCTCGTGGGCTTGGACGTCTAGGAATTTTTAAAAATTTCTCAACTATTTTGTTTCATGTTTTCCAAGTATTTCGTACTGTTGTGGAACTGTATCATTGTGGAAAAGTCTGAAATAGGAGAAATGAGAGTAGAAAAAGTTTTTTAATTACCCATGTATCCAAGATGTAAAGGTAGTAACTGTTAAGCTTCTAATTGATTTCTTTTGTCTTTCTTTGTGTCTACTTCTATATTTGTTGATAAACATTTTTTTAAAAATTGTTATATTTTAATGTGTTTTCCCATATGTCTTTTAACTATAGAAAATTTTAAATATTGCTAATAGAGACTAAACTAGTGAGGCTGGTTGTGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACTTGAGGTCAGTAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACCAAAAATACAAATATTAGCCGGGCGTGATGGCACGTGCCTGTAGTCCCAGCTACTCTAGAGGCTGAGGCAGGAGAATTGCTTAAACCCGGGAGGTGGAGGTTGCAGTGAGCCAAGATCACGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCAAAAAAAAAAAAAAAAAAAAGAATAAACTAGTGAACTGCCATATTATATAATGCTCAATTTTATTATTCCCATTATCCTTATGACTATTTCCTGATATCTAAAATATTTTTGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAAAAAAAATACAAAAAATTAGCTGGGCATGGTGGCAGGCAGTTGTGGTCCCAGCTACTCCAGAGGCTGAGGCAGGAGAAAGGCGTGAGCCCGGGAGGCGGAGCTTGCAGTGAGCGAGATCGCGCCACTGCACTCCAGCCTGGGCTAGGGAGCGAGACTCTGTCTCAAAAAAAAAAAAATTAAAAACTAAAAACAAAATAAAATATTTTCATCTTTATATCATTTAAAAGCTATAGAAAAGTTGCAAAAATAGTATAAGGAGTTCTCATACTCTATCCAAATTTGCCAATTGTTTACATTTTTCCTGGTTGCTTTGTTGATGACCATCAGCCAAATACCACCAGGAACATAACTAACCAGAGACAGCTGATTATGGCTTTCTGCAGCAAGGAAGCCCACATACCATGGTAAATGTGGGGTGTGTTGGTAAGAGGTATTTAAGAAGGGATGGTATAGGGTTTCACATAACATGCTAGATAATATTAGATATTAAATAATATTGTTATCTATTACATATCAGATCTGTTAAAAGACTACTAGTAGTTGTAGTGTTACTCATTAGATAGTGTTGAATAGCATATTACCTAACATCCTGTTATCTAATCTGTAGTTACATATTTAAATTTGTTCAGTTTTTCATTTAAAGTCCTATGCCAGGCACAGTGGCTCATGCCTGTAATCCCAGCATTTTGGGAGGCAACGGCGGGTGGATCTCCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGACACCTTGTCTCTACTAAAAATATTTTTAAAAGCCGGGTGTGGTGGCATGCTCCTGTAATCCCTGCTACTTGGGAGGCTAAGGCAAGAGAATCACCTGAACCCAGCAGGCGGAGGTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCATGGGTGACAGAGCGAGACTCTGTCTCAAAAAATAAAAAAATAAAGTCCTTATGACTGTGTCCCCTACCCCACCCTTCACCTGCAATGCCATTCAAAGTCCAGTTTATGCATTGTCTTTAGTTGTCACATTCCACAGTTTCTTTAGTCTAGAAAGATTCCACAGTCTTTGTCTTTTATAAACATGGTGGTTTTTTTTTTAATAGGAAAGTTATTTTGGAGAAAGATGTTCATTTGGAGTTTGATATATTTCATGTTTAGTTTCAGATTATGTATTGTTGGTAAGGATATTGCACAAGTGATGAGGTTTCCTCTTTATTGCAACATAACAGGGTTCACATGATGTGGTTTGTCCCTTCACTGGTGATCTCAACTGTGTTCACTTGGCCAAGATGATGCCTTTCAGATTTGTCCGCTGTAAAGTTACCTTTTTTAAAAAAACTCAAGTTTCTTATTGGAAGGTACATTATTAGTGGGCATTCTACTAAAGATGAACTTCTAGTTCTCTTCATTTATTCATTTGTTTGTTCAAGTATAAATCTCCCAACAATATGGACTCAGAATTCAGTCTTATGAAGGTAAATGACATGTGGATTAGCAATTTTTTTTCAACTCTATTGAGGTATATTTTACATAAAGCATTCACTCATTTCAGGAGTACAGTGATCTTTAGGAACTTTGTAAAGTGGAGTAACCATCATCATAATTCAGTTTAGTTATTTTTCACCCTCAGTTGGACTCTGTGCCCATTTACAATTAAACCTCATTCTCACCCCAAATCTGGAGCAACCACTAACCTACTTTTCCTCTATGTATACATTTGCCTATTCGGACATTTCATATAAATGGAATCATCTAATCCATGGATTTTGGTGACTGGCTTCTTTCTCTTATGATGTTTCCAAGGTTTGTGCATGTTGTAGCATGGGTTGGTACTTCATTCCTTTTAATTTCCAAATTAGATTCCATTATATGGATATGCCATGATTTTTCTATCCATTTACCCAGAGGAAGGCATTTTGGTTGTGCACAGTTTTGGGGTTAGTATGAATAATGCTGCTGTGATCATTCATAATACATGTGCTTGTTGCTACACAGCCTCCCCAGCCACCATTTCATGTCTCTCTTTTGCTGTCTCTGGCATTTTCCAG
Seq C2 exon
GCACAATTCCACCTTCCTTTGTGCTCCATTACTCAAGACACTGAAGACTCCAAAAAGTAGTAGGAAAAATGACCACATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159882:ENST00000429154:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains