HsaINT0186528 @ hg19
Intron Retention
Gene
ENSG00000159915 | ZNF233
Description
zinc finger protein 233 [Source:HGNC Symbol;Acc:30946]
Coordinates
chr19:44768467-44770477:+
Coord C1 exon
chr19:44768467-44768528
Coord A exon
chr19:44768529-44770350
Coord C2 exon
chr19:44770351-44770477
Length
1822 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACATCTGCTTGATGTTGTAGGAG
3' ss Score
7.95
Exon sequences
Seq C1 exon
TTCTGCCTTCCCAGGACCCTGCCCTTCCCCAGAAGGAGCAGGAGAAAATGACCAAGTTTCAG
Seq A exon
GTGAGTTGAGTTTTGATTTTTATCTCTTAAAATGACATCTCTTTTCCTCAAAGATTAGACACTTTTTTTTCTCTTCCTTGGGAAAGATAAAGGAGGAAAACAGGTATTTGGAATCTGCTAGTTACTTGATTTTCGATTGGTTCAATTTTTTGTTTATGTCTTTAGCTTTTGTTTTGGTAGTTTTATTTTATCATCTTTATTTCACAAGTAGTAGTGCAAAAATTCGTAGATATCAAAAAATGGGAGAAAACCTCCACATTACTACATTGCATACAAATAATCTATTTCCCCCATACTATTTTATATGTATTTACATATTGTATGTCTTATATCTATACTTGTCAGTGTATTTTAAAGAACTACAATCACATTCTATATACAATTTTCTTTTTTCAGTTAATGTTGTTACTAGAGTTTTATATGATTTAGTGTTCCTTTATGTATTTGTCTCAGAAGGGTTTTCATTTTTTGTCTAATTTTTCAGAGGCTACAAAACAAACACACAATGCTGTCTCTAAATAGTATTTCAATTTGCAAGACTTTTTCATGGGGCTTTAAAAATGCAATATTTACTTACAAAAATTATATATATCTTAAGTGGTCAGGTCAATAACAGTTTTATATCCCACTTCGACAGTTGTATAATTGCATTAGCCCACCATTCAGAACAAGATATAGAACATTTATATTACCCCAAAAAGGTCCCTCCTGTCTCTTTCAAGTCAGTTCCTTACTCCCCAGAGGCATCCTCTGTTATCCCTTACCCCCTTCTCACCCTTTCCCCCTGAGGCCCTAAAGTCCATTGTGTCATTCTTAGACCTTTGGATCCTCATAGCTTAGCTCCTACTTATGAGAGAGAACATACGATGTTTGGTTTTCCATTCCTGAGTTACTTCACAGAGAATAATAGTCTCCAATATCATCCAGCTTGCTGCAAATGCCATTAATTCGTTCCTTTTTATGGCTGAGTAGTATTCCATCATATATATATACACACACACACACACACACACACACACACACACACACACACACCACGGTTTCTTTTCTTTTGTTTTTTTTTGAGACGGAGTCTTGCACTGTTGCCCAGGCTGGAGTGCAATGGCGCGATCCTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTATAGGCACCTGCCAACATACCCAGCTAATTTTTTGTGTTTTTAGTAGAGACGGTGTTTCACCATGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCGTGGTTCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGGCCGGCCACACAGTTTCTTTATGTACTCATTGATTGATGGGCATTTGGGTTGGTTCCACATTTTTGCAATTGCAAATTGTGCTACTATAAACGTGCATGTACAAACACCTTTTTCAGCGTTGGGACTAAATTGACCCAACATTTCTAGGACAATTTGGTAGTATCAGTCAAGTTATAAAATACGTATTCCGTGTGATTCAAGATTTACAGTGCTGGGGCATTTACTGTTGGAATACTTACAAATGTCACCAAATTAAATACACAGGGGTTATTTTTTAGTAGCACACACTTTTGATGTGACTGTGGAAAAGTAGTCTATGAGATTGGCATGTGGGATGGAGAAAACGAGGAAGCTACTTAAAGTTCATTCGAGGCCCTCACAATCCAGAACGTCTTCCTGCCTGTTCTTTCTACCTGCTCAGTGCTGCCTCTCTCCCAGCAGTTATTGGCCATAAGATTGAGATTACATCTGCTTGATGTTGTAG
Seq C2 exon
GAGATGGTGACATTCAAGGATGTGGCTGTGGTCTTCACCAGGGAGGAGCTGGGGTTGCTGGACCTTGCCCAGAGAAAGCTGTACCAAGATGTGATGCTGGAGAACTTCAGGAACCTGCTGTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159915-ZNF233:NM_181756:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=NA C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCCTTCCCAGGACCC
R:
CACTGACAGCAGGTTCCTGAA
Band lengths:
188-2010
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)