HsaINT0186533 @ hg38
Intron Retention
Gene
ENSG00000263002 | ZNF234
Description
zinc finger protein 234 [Source:HGNC Symbol;Acc:HGNC:13027]
Coordinates
chr19:44148771-44150505:+
Coord C1 exon
chr19:44148771-44148897
Coord A exon
chr19:44148898-44150412
Coord C2 exon
chr19:44150413-44150505
Length
1515 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TGTGACTTTGCGTGTTCTAGGGC
3' ss Score
9.52
Exon sequences
Seq C1 exon
GAGGGACTGACCTTCAAGGATGTGGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGTCCAGAGGAATCTGTACCAAGATGTGATGCTGGAGAACTTCAGGAACCTGCTGTCAGTGG
Seq A exon
GTGAGGACATGAGCTTTCTAACACTCAATGTCAGTCTCTTGGAGTGATTTTGTGTCTTCAGGGGTTCAACACTTTGGAGGTCTTGAATTAGTCGCCTACATTTGTAGACCTGACTTTCCTATCAGTAGTTTTTAGTGAAATAAAATGAGATAGAAATATCAGAGTTCACTAAAATTAATGGAATACATAGCAAATAAAACTGGTAAATTGCATGAGTGGTGTGAGAACTTGTGGGAGGAGATTTAATGAAAATAAACGGGGGCCAGGCACAGTGGCTCACGCCTGCAATCCCAGCACCTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGGCCAACATGATGAAACTCTATCTCTACCAAAAAATAAAAAATACAAAAATTAACCAGGTGTGGTGGTGCATGCCTCTTATCCCACCTACTTGGGAGGCTGAGGCATGAGAATCGCTTGAATCCAGGAGGCAGAGGTTGTAGTGAGCCTAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTGTCTCAAAAAAAAAAGACATTGGTTAGAAATGTAATTTTAGTAATGCACCAAGATGTAACAGTTTTTCTGTTGTTTGAGATAACACCTGGAGTTTTTTGTTTTATTTTTAAGAAGATTAATGAGTGCAGACAGAAATGTGAGGTTAGAGTGAAGGTTTAATAAGCAAAAGAAGAAAGCTTTTTGCCAGCAGAGAGGGGGACCCAAATGGAATTCCCCCTATGAGGCAGGGGTTTGGGGTTTTTATGGACTGGGAAGGGGAAGGAATGTGCTTAGTTTGTGGGCTATTTTGGAGAAAGTGTGACTTAGCTTGGCCCGGAACCTTGGCCCAGGACCAATCAGGTTGAAGTAAAGATATATAGAGACCGGACTTACAGTTTGAAAAAAAGAAAGTAGAGTGCCCACTGGAACCCACTGGAGCCCACTGTACCTATGCCCACAAAAGGAGAAGAAACCTTTTCCTGGGAGCCCGCTGACTATACAGAGGACAAAGGCATTCTTATGCCAGGCCTTGCTCCTTTATCTGAGCGAGCTGGAGGTATGTACAAGCTTTTATCCAAATGGGCTGGAGGTTTTTCTATCTGTGCAGCCGTGGGCATGTCTCCAGGCACAACACCCTGTGGTAGTTCCCTTATTGGTGCCTGCAGCTTAAATTTTTTTTCCAGGCTGCTTTTTATGTTATATAAAAATAAGACACTAACCCATGGGTCAGGGGCTCTCCAAAGACCCTTCCCTTGCTGTCTACCTAAGGCAAGCGAACTAACTCCTTTCAGAAATAGGTTTTTATAGCACATATTTATGTCTATGTGTCTGGATCTTGAAATACTGATATTTCTTCATTAGGTTCTTCTAAAAGTGTTTGAAAACACTACTTTTGATTGATTGATCAGTATACAGTAGTAATTCAAATTGCCAGTAAGTTCAGTTGTACCTTTAGTGTGTTTGTTTTAAATATGTGACTTTGCGTGTTCTAG
Seq C2 exon
GGCATCACCCCTTCAAACATGATGTATTCCTTTTAGAAAAGGAAAAAAAGCTTGATATAATGAAGACAGCAACTCAAAGAAAAGGGAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000263002:ENST00000426739:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.094
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACTGACCTTCAAGGATGT
R:
TTCCCTTTTCTTTGAGTTGCTGT
Band lengths:
214-1729
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains