RnoINT0168465 @ rn6
Intron Retention
Gene
ENSRNOG00000019416 | Zfp61
Description
zinc finger protein 61 [Source:RGD Symbol;Acc:1563843]
Coordinates
chr1:81124908-81126135:-
Coord C1 exon
chr1:81126009-81126135
Coord A exon
chr1:81124977-81126008
Coord C2 exon
chr1:81124908-81124976
Length
1032 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TGATTCTTGCCTGTTCATAGAGT
3' ss Score
7.44
Exon sequences
Seq C1 exon
GAGGCAGTAACATTCAAGGATGTGGCTGTGATCTTCACTAAGGAGGAGTTCAGGCTGCTGGACTCCACCCAGAGGAAGCTGTACCAAGATGTGATGGTGGAGAATTTTCGGAACCTGCTCTCAGTGG
Seq A exon
GTGAGGACAGGTGCCCTCTGGCACATACCTTGGAGTTGGAACATTTCTTGTCTTTTATGAACAGGATATTTCAGGACATTTTGTTTGTTTGTTTATATGTCTGTATAGGAGTATATTGCCTGGTACCTATTGAGGCCAGTGGAAGGTGTTAGATCCCTTGAAACTCAAGTTACAGATGGTTGTGAGCCATCCTAGTACTCAGGAGGCAGGTGAATCTCTGTGAGTGTGAAGCCAGCCTGGACTACAGGGCTACACAGCGAAACCTTGCCTTGAAAAACAAACAAACAAAAAACCCCGCAAAATCATATCTTATTTGGGGTATGTGTGTGTATGTGTGTGTAAACACACACACGTAGGTATGTGTACCCTCTGAGGCTAGAATTAGAGGAATTACAGATGGTCGTGAGCCACAGGATGTGGGTACTAGGGACTGAACTTGGGGTCCTGTGGAAGAGCAGCAAGCACTCTTAACCACTGGCCCATCTCTTTAGCCCCATACTGGTCATTTTTAAAAGATATTTATTTTTATTATTTTTATGCGTGTTGTGTGAGTGAGACACACCTTTGTGTAGGAGCCCTCAGAGGCCAGAGAAGGACATTGGACCCCCTGAAGCTGGGGCTAGGTGGTTGTAGGTGCTGGACACAGAATTCTGTTTGGGAGAGCAGCAAGTGATCTAAACCACTGGGCCGTCTCTCAACGCCTCTGCTGGCAATGTCTCCTGAAACACAATGGAGTGGAAAACACCAGATTCCTTAGAGAAAATAACCATGTTGTAGGAAAAGGAATGAGTGGATGCTGAGCGAGGGAGGATAGATCTGAAGACTGCAGGCGTGAACTCAAAGTGGGTCGCTCAGATTGTTTCTGACACGCGCATGTGTGTGGTAGAAGGGTCGCATCATAAACGGTGTGTCTTCCCTGGGCTACGTGTGTGCAAGCTCGATCACACTGTTTTGGTTGCGTTGGTGATGATCTCCGTGACATCCCCAGTGCATTTTCGCCCTTTGACATTTGTGATTCTTGCCTGTTCATAG
Seq C2 exon
AGTATCAACTTTTCAAACAAGAGAAACCACAGCTAGAAAGAGAAGAGAAGCCTAGGGAGCAAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019416:ENSRNOT00000026252:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.653
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTAACATTCAAGGATGTGGC
R:
TGAACCTTGCTCCCTAGGCTT
Band lengths:
192-1224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]