MmuINT0179570 @ mm10
Intron Retention
Gene
ENSMUSG00000050605 | Zfp61
Description
zinc finger protein 61 [Source:MGI Symbol;Acc:MGI:99663]
Coordinates
chr7:24293345-24295081:-
Coord C1 exon
chr7:24294955-24295081
Coord A exon
chr7:24293435-24294954
Coord C2 exon
chr7:24293345-24293434
Length
1520 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TGATTTTTGCATGTTCACAGAGT
3' ss Score
7.58
Exon sequences
Seq C1 exon
GAGGCAGTAACATTCAAGGATGTGGCTGTGGTCTTCACTAAGGAGGAATTCAGGCTGCTGGACTCCGCCCAGAGGACGCTGTACCAAGATGTGATGGTTGAGAATTTTCGGAACCTGCTCTCAGTGG
Seq A exon
GTGAGGACAGGTGCCCTCTGGCACATGCCTGTGATCTTGCAGTTGGAACATTTCTTGTCTTTTCTGAACAGGATATTTCAGGACATTTTATGTATTTATTTGTTTATTAATTTGTTTGTTTGTTTATATGTATGTATAGGAGTATATTGCCTGGTACCCTTGAAACTAGAATTACAGATGGTTGTGAGCCACCATGTGAGTGCTAAGAACTGAACCCGAGTTATCTGAAAGAGCAGCATTTGCTCTCAACCCTGAAGCTATCTCTGCATATTATTATTTTTAAAATTTATTACTGGGCAGTGGTAGCACATGCACTCAGGAGGCTGAGGCAGGTGGATCTCCTGAGTTTGAGGCCAGTCTGGTCTACACATTGCCTTGAAAAGCAAACAAAAAACTGACAGCAAAATCACATTTTACTTGGTGTGTGTGTGTGTGTTTGCGTATGTGTATACACACATAGGTGTATGTACCCTCTGAGGCTAGAATTACAGGAATTACAAATGGTTATGAGCCACAGGATGTGGGTCCTAGGAACTGAACTTGGGGCCTTCTGGAAGAGCAGCAAGCACTCAGCCCCTGGCCCATCTCTTTAGCCCCATACTGATCATTAAAAGAGACTTATTTCTGTTATGTTTATGTGTATGTGTGAGATACACACCTTTATGTGGGAGCCCTCAGAGGCCGGAAGAGGACCCTGGACACCCTGAAGCTGGGGCTAGGCAGTTGTAGGTGCTCATAGAACTCTGGGAGAACAGCAAGTGGTCTGAGCACTGGACCATCTCGCCAGCACCTCTGCTGGCAGCTTTTAATGAAACCCGGTACAGTAGGAAACACCAACATTCTGTACAGAGAATGACACACGTTATAGGAAATCAGATGCGGAGTGAGTGGGGAGAGGCCTGATGACTAGGCATGACCTCAGAGTAGATCGCTCAGACTGTGTTCCTGAGGCACGCATGTGTGTTGGAAGGGTCACATCATAAATGCTGTTTCTTCTCTGGGCTGTTGTTGTGTCTGGCCAGCGGCTCACACGTCTGGGTTCTGTTCTGGAAAGGCATTTTGGAATCTGGAAGAGAAGAGGGAGCTAGGCGAACGAGAGAAAGATGAAGCTAAGACAAAATTCTGATCAAAGCTCAATTTTACTAATTCATGCACCGAGTTATGAAGGAGGGGAAGGGGCCCAATTCCTGCCAAATCATCTTGGAGCAAGGTTGCAGGTGAACGCCTGATAGCTCTGGAACAGATAGGTGGCAGGCAGTGGCAGTGGGAGTGGCAGGACGATAGGGTGGCAAGCTCCGCCCCATGCTCTCTTAACACTGAAACCTGAGCAAACAGGTTTCAGGCTGAGGAGGGGAGGTTACAGGCCTTGTGTGTGTGTGTGTGTGTGTGTAAGCTTGAACACAGCTATAACAATACACTATTTTCGTTGCACTAACGATGATTTCAGGTGCCACTGGTGTCCCCAGTGCATTTCCACTGGACCGTGCCCTTTGATATTTGTGATTTTTGCATGTTCACAG
Seq C2 exon
AGTATCAACTTTTCAAACGAGATAAACCATACCTGGAAAGAGAAGAGAAGCCTCAAATGAGGAGGGCAGCCCCGAGGGAGAGAGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050605:ENSMUST00000077780:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.613
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTAACATTCAAGGATGTGGC
R:
CTGAATCTCTCTCCCTCGGGG
Band lengths:
214-1734
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types