HsaINT0186537 @ hg19
Intron Retention
Gene
ENSG00000159917 | ZNF235
Description
zinc finger protein 235 [Source:HGNC Symbol;Acc:12866]
Coordinates
chr19:44803759-44807605:-
Coord C1 exon
chr19:44807543-44807605
Coord A exon
chr19:44803886-44807542
Coord C2 exon
chr19:44803759-44803885
Length
3657 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ACATGTGCTTGATGTTCTAGGAG
3' ss Score
9.29
Exon sequences
Seq C1 exon
GTTCACTTCCCCGGAACTCTGCCTTTTCCCAGAAGGAGGAGGGGAAAAATGACCAAGTTCCAG
Seq A exon
GTAAGTTTGGTTTGCCTTTGTGTTTCTTAAAATGACATCTCATTTCACAAAGATTGGACACATTTTTCCTGTTTGGGAACAGTAAAAGGGAACGAAAGGCACTTGGAATGTTGTTATATGCCAGGTTGTTGCCTTTTATTTCAATATAATAGTATAAAAATTAACAGAGAGATATATATATATCTGTTAATTTCTAAAATATATTTCTATATAATTATATATTTATATATACGTATATATTTTATATTTATATACAAATATATATGTATATATTTATAAGAAATATACGTATATTTGTATATATGTATTATATATACAAATATATACGTATATTTTATATAAATGTATACAATATATACGTATATTTTATATAAATATATACGTATATATGTATATATTTATATATAAATATATACATATATACGTATATATTTATATATACAAATATGTATATATAAATACATACAAATATATACGTATATATTTATATACAAATATGTATATATAAACACATACAAATATATATAAGTATATATTTACTCATATATAAGTATATAGTTATATATATATAAGTATATATATACTCATATATAAGTATATAGTTTTATATATATATATATATGTAAATATAAATCTCTATATATATTTAGAGACAGAGTCTCACCCTGTTTCCCAGGCTGGAGTGCAGTGGCTCACTGCAGCCTGGGCCTGGGCTCAAGAGATCCTCCCACCTTAGCCTCTTGAGCAGGTGGGACCACGGGCACACACCAGCACAACCAGCTAATTATTTTTAGTAGAGATGGGGTGTTCCTGTGTTTCCCAGGCTGGTCTTGAACTTCTGGGCTTAAGAGATCCTCCTGCCGTGGCCTAACAGATATATTTTTTAAATGGAAAACAACTCTCACATTACAAATATGTTTACAAATCATTTCCCACATTCCTTTTCATTTGCACTCAACATATATAATCATACTTTAGGTACAATTTCGAATTTTTTAAATTTAATTTTATATCACCTGCTTTTTAAATGATCACATCATTTTCCATCATTTACTTGTTTTTATTTTTCCTCATTCTCCATGTTTATGTAATCTATGAATTTTGCCATTTTAAGGACATTGACAATAGCAGTTTTTCCCCATGTAACTTCTCTTCCCAAATAAGGATTCTGAGAATTCTACCATTTTTTTAATCTTTAAAGTTTTAGACTCATTTTCTCATACACAGCACCTCATTTTATGGAGAGAATAAAGTATAGCTTAGTGCAGTAGCATCTGACTGATGCCAAACTCAGAGAAAGTAATTTTAGTTTCAAACGAGCTAGATTTCTTTCTTTAATTCTAAGTAAAACCTTGTATTATAGTTAAGTATCTGTTTTATTCATTAACATGTTATTATATTTTAAAGATGCACATACTTAGTTTAAAAGTCTTATAGCACTAGGAGATTCACCAGGAATTTGCACCATGGAACAGCTTTGTGAGGATGTAGATGGCCTTATCTGTATTTTAAACATAAAGAGACAGGTGTGAACCTTTAGACACTTATTGAAGTCCACTCAATGCCCAGCTGACGTTAAAGCTTCCAGTGCCTAAGCCAGAAGTTTCAGGTGTTCCATTTGGGTGAAGGCCAGGCACAGTGGCTCACCTGTAATCCCAGCACTTTGGGGCTGAGGTGGATCACTTGAGGTCAGGAGTTCGAGATCAGCCTGGCCAACATGGTGAAAGCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCGCACACCTGTAAGCCCAGCTACTCATGTAGATGAGGCAGGAAAATTGCTTGAACCTGGGAGGCAGAAGTTGCAGTGAGCCAAGATCACACCACTACACTCCAGCCTGGGTGACAGAGTGAGACTGTCTCAAAAAAGAAAAAAAAAAAAGAGACTATTCAGGGACTTGAGGCTATGCTACACATGTATGTGTCCCTGGCATGTCCTGGTGGATGAAGGGCTCCAGAAATCACATTGCTCTTCACCAGATTCCCTTTCTCAGTGCATGGCTCTTTGCCACATGTGTCATCGAGTTGTTTGGTACATAGATGTTCAGAACTCCAGCCAAAACAAATGCAGGGATGTGCAGTGTCTTCAGATAAAAAATGTTAATTTCCATACAGAAAAACACCATATACAAACTTTATGAGACAAGTAGGAAACAGGTGCGGGGTAGGAATTTATATATTCTAGAAAATGACTTAATATTCTTAATAGTAATGTTACTGATACATGAAAAATCCCAGTAGGATTAAGGAAAGGCAATATGTGAAGAAAAGTAATATCAGATCATCTTTAAAAAAATTAAATAGCTGTTTATATCACTCACCAAATTACTCAAGATTTAAAAAAAAAAATGTCCAGTTTTGGCCAGAGTATGGAGAATCGGGAATACTTATAATCTCTTACGGGAAGAGTTAATTGAGAAAATTAACATTATACCAGCAAAACAAAGGTATATATATTTTTTTACAATGTAATTACCACTTCTTGGAACTTACCTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCATTCAGGCTGGAGTGCAGTGACATGATCTTGGCTCACTGCAACCTCCGCCTGCCGGGTTCAAGTGATTCTCCTGCCTCAGCCCCCCGAGTAGCTGGGATTACAGATGTGTGCCATCATGCCCAACTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTTGTCGGGTTGGTCTTGAACTCCTGACCTCAAGTGATCTGCCCGTCTCGACCTCTCAAAGTGCTGGGATTACAGAAGTGAGCCATTGCCCCCAGCTGGAACTTATCTTAAGGAAATAACCATACGAGCTGGCTAAGATCTATGTAAAAATATGTTTTCTTGTGGCATTGTCATTTTTAAATTTAAAATGATCAAATGTGCATTATTTAGAATGGTTAAATATATTGTAGATCATGTTTATGGACTATCATGCAGCTATGAATGGGATGAAATAGATGATGGTGATGATAATAAGAGTTAATGATCAACATTTATTGAGTACTTACTGTATGTCACACACTGTCCTAAGTTCTTATATGTATTCACTCATTTAATCCCTTCAAGGACCCTATGATATAGGTCCTCTTATACAGATGTGGAAATTGAGGTTTTGTGACCAGCGTCACAAAACTAGCAATGGATAGACCCTTGGAATGTGAACTAAGGCAGTCAAACTCCAGAGCCTGTACTCTTAACCTTGACCCTAAATGCTGCTGCAGTTGACCAAGACAGCATGTTCCTGAGAACCCAGAGAGTGAACTGCGTACTTGTGCCAGAGCTTTATGAAGGCCTGTTGGATTGACAAAATAGTGGTAGTACTATCAAACACTGTTGGGAAGAAATTAATGCAAAATTTCTTATCAAATTTGGTGCTATCAGTCAAATGGTAAAATGTGTGTATGCCATGATTTAACAATGACAGTTCTAGGAATTTAACTATATAAAGGGCACCACGTTACATGTACAAGGTGTTTTCCTTCTTCCCCCTAGCATTTTTGGTGTGATTGTGGAAGGGGAAGAATAGTAACTCTACAGAAAGAGTTGCTTAGGTGCCAGTGGCCATTGGGTGTGAGATTGAGGTTACATGTGCTTGATGTTCTAG
Seq C2 exon
GAGGCAGTGACATTCAAGGATGTGGCTGTGGCCTTCACTGAGGAGGAGCTGGGGCTGCTGGACTCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTTAGGAACCTGGTTTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159917-ZNF235:NM_004234:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)