MmuINT0178765 @ mm9
Intron Retention
Gene
ENSMUSG00000047603 | Zfp235
Description
zinc finger protein 235 [Source:MGI Symbol;Acc:MGI:1929117]
Coordinates
chr7:24920277-24922191:+
Coord C1 exon
chr7:24920277-24920334
Coord A exon
chr7:24920335-24922064
Coord C2 exon
chr7:24922065-24922191
Length
1730 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GCATGTGCTTGCTGTCACAGGAG
3' ss Score
6.86
Exon sequences
Seq C1 exon
CTTGCTTCCCAGAGCCCTGCCTTGTCTCAAAGAGAAGAGAACAATGACCAAGTTACAG
Seq A exon
GTAAGTTGGGTTGCTTCCCCCATCCCCACAGTGCTAGGGATTGGAAACATGATCCCTGCATGCTGGGCAAGTGCTCTACACAGAGCCTCTCTGAACTGCATGAAGGAAGAGGGGAAGTTGCTGAGAAGAAAGGTCTGGAAGGAGGAGGGATAAGAGAGGACAGTGGGACATGTGCTCAAAGTGCACTGCACTTGGGAAAGTGTACAAGGATGAGTAAAAAGAATTTGAAAAAGTGGGCTGGAGTGATGGCTCAGTAGTTAAGAGCACTAGCTCAGTTTGGTTCCCAGCACTCACACCTGATAGCTTACAACTGCCTGTAACTCCAATTATATGTAATTAGAGGATGTTCAACGCTCTCTTCTAGCCTCCCAGGGCACCTGCACACACACACATCTACACACAAACAGATGGTGTACACATACATTTTAAAATCCCTTTAGTTCATTTACATTTAAAAAAATGACATTTTCCACTATTTGCCTAATTTTATTGTACAATTCAGTATGAGGTCTCCATACTCATGTGGGTTATGAATTATATTTTTACTTTAAAATTTTGTATTACCATTATTGTGTGAGGGGGTTGGTTGTAAGCATGCCAAGGAGTGCATGTAGATCTCACAGGATACATTTTGGGAGTCCAGCTTTTTTTTTCCATCTTGCCAAAGCAGGTCTCCTGTTTCTGGGACTCTGGAGGCAAGAAGATTCCTGGTACTCACTGGCAGCCATCCTAGCCTATTTGGCAAGTTCCAGGCCAGTGAAAGGCCCTATTTCCGCCCCCCCCCCCAAAAAAAAAATGATGGCCTGCACCAAAGGCTGTCTTCTAGTTTCTAAATGCATGTGCACCCTCATGTACATAGGTACACTGACATGTATGCATACGTGTGCACACAGATCACTGGTCACCCTCATTTCCTGCATTTGAAATTCATATCCTGAATAACCAAGGAGCATCTGGCTACCACCATCTGCAAACCTTCTGGGGTTGACCTACCTTGGGCAATGAGGGCATCAAGAAAGAACAGATTTTACTAATGAAGTATTCTGAATCTAAAATTCATAATGTTGCACAACATAAAACATTTTAAATGATGTCATCATTCATGGACTGTCATTCAGAGCAGTTTGGATTTGTGACTGAAGATACACCTGAACTGTACTGCCCAGAAGGAGCAGGGCATTGTCAGCTCTTTCCAGTACAAAGTCAGTACATGACTCCCGACATGGGTTGGAATCCGTGACTTCCCATTTAACGGTGGCGGACCTACTGACCCAGCTGTGGAAATGGCACCAAGTTCCTTGTACCGTGTTTTCTCTTTGCCTCTATCCCCTCTGTAGCTATAGAAAGGGGTGAATAGGTATACTGGCTGGTGTTACGTGTCAAGTTGACACCAGCGAGAGTCATCAAAGAGCCTCAGTTGAGGTCCTGGGTTCTATAAGAAAACATGCTGAGCAAGCCAGTATATAGCACCACTCCATAGCTTCTGCATCAGCTCCTTTCTCCAGGTTCCTGCCCCTGCTCGAGTTCCTGTCCTGACTTCCTTCAATAATGAACAGGAATATGAAAGTGTAAGCCTAATAAACCCTTTTCTTCCCAACTTGCCTTTTTGTTCATGGTGATTTGTCCCAGCAATAGAAGCCCTAACTTAGACAACAGACACTGTATAAACAGTTGTCCAGACCCAGTGACATCAGAAATGAATCTGAGGTGGCATGTGCTTGCTGTCACAG
Seq C2 exon
GAGGCAGTGACGTTCAGGGATGTGGCCGTAGTCTTCAGTGAAGAGGAGATGGGGCTGCTGGACGCTGCCCAGAGGAAGCTGTACCATGATGTGATGCTGGAGAACTTCCTGAACCTCCTGGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047603-Zfp235:NM_019941:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTTCCCAGAGCCCTG
R:
CTGCCAGGAGGTTCAGGAAGT
Band lengths:
182-1912
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: