HsaINT0186591 @ hg19
Intron Retention
Gene
ENSG00000198169 | ZNF251
Description
zinc finger protein 251 [Source:HGNC Symbol;Acc:13045]
Coordinates
chr8:145980081-145980970:-
Coord C1 exon
chr8:145980790-145980970
Coord A exon
chr8:145980189-145980789
Coord C2 exon
chr8:145980081-145980188
Length
601 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
CTGAGTTCTCCCCACTGAAGGTA
3' ss Score
5.58
Exon sequences
Seq C1 exon
AGGCCCCGCAGGGGGCGGGGAAGCCTGCGTGTGCGCAGCTCGGCCCGGCCCGCCCTCTTCATCCTAGCCCGCCCCCTCCCCGGCTCTGGACCCGGTTCTGTGGGAGGGTCCGTTCCGGGCTCGGTGCGACTGCGCAGCTCCTCGGCGCTTCCTCGGTGGCTTCCCCGGGTCGAGCAAACAG
Seq A exon
GTGGGGCAGTGTCGGACCAGGAAGGAGCGCCAAGCGGGCAGGCAGGCGGGGAGGGCGCGGGGAGGGCGCGGGGAGGCGGCGGCCAGTCCAGGAGGAGCCTGTTCTGGGTGCCGCGGGAGCCACCGACGGGCTGCAGAGGCCGGGAGGAGGCGACCGCGGCGCGGCCCTAGAAGGCTGGACTGAGGACCACAGCTGGCTTCCGGCCTCTCCCCGGAGCCTGGGGCCTTCGGCAGCATCCCCGCGGCCTCCTTCTCACGTCCTCAGCCTTGGTGAGGCTGCACCCTCACGTGGCTCTTTGCCCCAGGTTGGCCAGGCAGGTAGAACGGCCCTGCACCCCATTTCCAGGGCCTTCAGCAGGTCTGGACCACGGGAACTGCCAGCTTTCACCCCTTAGCCGGGCGTCCCTGGATCCCCCCGGGCTCTGGCTCTGGCCGTTCTGGGATTTCAGGAGTCACTGAGCAGTAGGGCACGTCGGCCCGTGCTGCATAGTGACCTGCCTCCCGCGACCCAGGAGGCCACAGCAGCAATCAGCTTCTGCCTCCTGGCCATCCTTCCACACCCCTGGTTGAATGGGGCTGAGCCTGAGTTCTCCCCACTGAAG
Seq C2 exon
GTAAGTTCGGGGAGACTTCAGGCCAGGGCAGTCTCCTGTCTTCTCTTGGAAACCACAGCAGCCCATGCACACAGAATGGCAGCCACATTCCAGCTTCCAGGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198169-ZNF251:NM_138367:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCCCTCTTCATCCTAGC
R:
GTGCCCTGGAAGCTGGAATG
Band lengths:
238-839
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)