HsaINT0186605 @ hg19
Intron Retention
Gene
ENSG00000152454 | ZNF256
Description
zinc finger protein 256 [Source:HGNC Symbol;Acc:13049]
Coordinates
chr19:58455302-58459077:-
Coord C1 exon
chr19:58458810-58459077
Coord A exon
chr19:58455429-58458809
Coord C2 exon
chr19:58455302-58455428
Length
3381 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
ATGTGTCCCCATCCTGGCAGGGC
3' ss Score
8.6
Exon sequences
Seq C1 exon
GGCGGGACTTCCGTTGTCCTCCTTGTGGCGGTCGTTTTGGCATTTGTCTGGACTGATTACTTGGTAGAAAGCCCCGGAGCGCTGGGTCAGCATCATCCGTGACTGACTGAGAAGGCGCGAGAGGAGTCTTCCCCGCTGCACAGAGGCGTGGCTGAGGCTCGGCGGCGCCCAGGGTACCCAGGCCCGGCCCGGAATAAGGACATCCTCTCTGGCCCCGCTCCGCTCACAGAGTCAGATGGCGGCGGCCGAGCTGACGGCCCCGGCCCAG
Seq A exon
GTATGTGCCGCGTCCTCTGGGCCTTCCCCGCCCTCCCCACGCTAGTCCTAGCACCCCCGAGGGCGCTTGCTCGCGGCCCTGCTGCCCAGGACAGGACACGGGGGCTCGCCGGAGGGGCTCCCGTTTCCAACACCTGGTGTGCTAGGGAAGGGAGGGCGCGACTGGCAAGGAGCCCCTGATGAGAGGCGCCACTGAGCCCTGGGGCACAGAGGTGACACAGCCATTGCGAGGGCACCCGGCTCCAAGGCCAGGCATGGGGCTACGGGGTGGCTTGAGCCCATCTAATACCGCCATAGATGCTCTTCTCTGAGGCCTGGCTCTTTCTACGTTTCCCTTGGCTGTAAAGGGTTATGAAATCTACGCCAGGAAGGGGAGGGTTTCCCAGTCTCTCACTAGCCCTAACTCCCACCCACAGGTTCTCTGGGTTGTGGAGTGCCATTCCCCCAGCCCTTAGTTCTGAAGACCTTGGGTGAACCCCAAGCCCAGGGTCCTATGTCCATGTTAGCCGGTATATAGAGTTGTTCCAATTTCTGGCAGCCATGTGAACGGGTGTGGAAAGTTTTTCCAGAAAGGTACAAGATGTGCAAATGCTTAGGTGCAGTACGGAGCTGGGTGCATTTATGAAGCCACAAGTCTCCTTGCTTTCTGGTGGGAAGCAAAGAACAGGAGGATAGGCGTCAGGACTGCAGTGGCTGCCTGAGAAGTTGAGTGTGTTTTCAGGAGGTAATAGCAAGTTTGAATCAGAAAAAAGAGGTAATTTACCAAGGTCTTCACAGGCTTCATCTGTGTGCACAGTGGGGCACAAACTGGGGGGTTGAGGGAGGAGGAAGGAAAATCAGGGTAGACTAGTCCAAGTGAGGGTTACTGGCCCAGGATCGTGATTTAGGAGATGTGGTTAGATTCCGGATGTGTGGTTTCAAAAGGGACAACTAAATTACATAATGTAGGTGGTGAGGGAGTGAAACAGAGGGTTCAGAGAAGACTCCAGGGTTTTTGGTATTAGCAGCTGTAGGGAAAGAAGTTTCATCAACTAAGATGAACAAATTGGCAATAGGAGTAATATTCACTAGGGATATCAGGTTTGTTTATGCCATGCTAAGAGTCAGATCTTTCAGAGCCTACTAAATGGAGGCGTTAAGTGGGCAGATGAACGTGCCGGTCTTGAAATCTAGGGAGTGGTTCAGGGTGCAGATATTCAAGATGTGGCTGTTGTGCGCACCAAGGTTAGTGAGCTGTGGGTCACAGTTAGGCGGGGCAAGCTCCAGGTTTTGGTTGTAAAGCTGTTAGTGGGCCAAGACTGGGAGGATGATGATAGAGTAAGTGGTCATGAAGGCAAGGTATGTAAAAGACAGTGTAGTTTGGCAGTGGCCACGGCTCCCAAGAGAAGAATGGACATGAGATGGATGCAAACGCATAGGACACTCAGGCCAAAACTCGTGCTTATTCACCACTTTATGGGTATCCAGGATTTTGTGATAACTTGATGGGGCCTGGGTGTTTCATTCAGGCTGGAAGATTAAGTTAGTGTCATGTGGTCATTTGTGAGAGTCATTGTGTGTGAGATGAACGACCAGTGAGGCTGGGATTTAAATGAGCTTTAGGTGGATATATGACTCTCAAGGGGATGGTAAGTGCAGCACAGAAGTGGAATAGGGCCATGGTTATCTGTGATTCACCTGTGGTTCTGTGTGGCTATGTCTGAGGCAAGGAATACAGCCTGGCAGGGAGGCCTTCAAAGAAATTTTTGAGGCTGCTTCCACTAGTGTAAGCTGTGGGAAGTCTGGGATTTTGGATCCTGTTTATATCCACACTCTGGATGCTGCCTGCCAAGTTGCGGTATAAGGCCGGAAATTAAGGCCCAGTATGATATGTCGCCTTGACATCTGATGAAAACGATACAGCCTTAGATGGCCTGAGAACAAATTCCCCTTCCCACTTTGCTCCCATGAATAAGCTCTCTTAGCCAAATGAACCCTTCTTATCCATTCTTATCCAGGGAACCAGAACAGTTCCTGCTTATTACTTTGTAGTGGGTTTCAGTTCCCTATCAATTTTTTGAGTTATTCAAACAAGCCAGTCCCCTCCTCTGGGGACCAGTGGAGCTTCTCCATCTTGATGCTACAAAACTTACATTCTACAGCACCTGGTTGTTACTCTTTTCTGGAGTACTACCTCCGTATGGCCCTGTGTGGAGTGTGGTATTCTTTCACAGGCTATGAGTATTTGTCTTTAATTAATAAGCTGTTCAGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGCTCACAAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCTTCTCTACTAAAAATATAAAAAATTAGCCAGGCGTGATGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTAAGGTAGGAGAATGGCATGAACCCAGGAGGTGGAGCTTGCCCCACTGCACTCCAGCCTGGGCGACAGAGCAAGATTTCGTCTCAAAAAAAAAAAAAAAATTAATAAACTGTTGATCTCATTTGTCCAATGTCACGTGTCTTATATTTGGCTGTTGGTTATCCACTCTTTTTTTTTGTTCTTTGAGACGCAGTCTCGCTGTGTCACCACGCTGGAGTGCAGTGGCGTGATCTCGGCTCATTGCAACCTCCACCTCTCCACCTCCTGGGTTCTAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGTACTACAGCCGTGTGCCACCACGCCTGGCTGATCTTTTGTATTTTTAGTAGAGATGGGGTTTCACCCTGTTAGCCAGGATGGTCTCCATCTCTTGACCTCGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCCGGCCCAGGTTATCTACTCTTTCACTCAGGTAGCATGTGGGGAAGCCAGGATTTGCCTGTGGTATAGGACGTAGTGGTGGTCATGGTCATGTGGCAGTGGGATCTGGAGACCTGAGGTATGTGCAGTGTAATGAATGATATGCACTTGGAGAGGGAGTGTGCCTGATGGCCCCAGTGTCCTGATTGAGACTTACATGACCTTGGTCATATGAGAGGAATGCTTGTCAGGAAGGAGTGGTTGCCCTTATGCCACGCCCACAGCTTAGATACATGTATTTGTTCACCTGCCTCTTGTTACTGATGGCTGCAACCAGTGACCAAGAGCCCCATTAGGAGACAACAGCACCAGCTGACTGCTTTCTCCTCTGAGCTGGGGAGCTTGGAGAGCTTGGAAAGAGGATGAGCATGGGGTAAATGTGTGAGGGGAAGGATTATGGATCCTGAGAGGAGGAACCGTTTGTGGTTTCATGTGTCCCCATCCTGGCAG
Seq C2 exon
GGCATTGTGACCTTTGAGGACGTGGCTGTTTACTTCTCCTGGAAGGAGTGGGGTCTTCTTGATGAGGCTCAGAAATGCCTGTACCACGATGTGATGCTGGAGAACTTGACACTTACAACCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152454-ZNF256:NM_005773:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)