HsaINT0186641 @ hg38
Intron Retention
Gene
ENSG00000174652 | ZNF266
Description
zinc finger protein 266 [Source:HGNC Symbol;Acc:HGNC:13059]
Coordinates
chr19:9418762-9420218:-
Coord C1 exon
chr19:9420065-9420218
Coord A exon
chr19:9419300-9420064
Coord C2 exon
chr19:9418762-9419299
Length
765 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
CCTTCTTTCTTTTCCATGAGGTC
3' ss Score
-2.69
Exon sequences
Seq C1 exon
GATACCGTTAACCCTGGATAAAGAGAATGGAGGTTACCTCTGTCCGTGTAGATTCCTAAGCTGTCCTGGAGTGATCCTTGGAGTAAAGGAAAGGTGCTTTGAAGCACATTCAGCCATCAGCCCTGTGGGATGGCAGCCACTGATTTGTCCTATG
Seq A exon
GTAAGTCCTGTTTCTGTTCATTTTCAGATACCCTGCTTTAGGTGTCCCCCCCCACACAGTATGGAGTCCAGTGGCCTGTGCCTGATCATTCACGCTGCAGCTTCATTTCTGAGGTGCTGATGTGGGCTAGGGAATGCTTTGTTCCTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTTGCTCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCATTGCCACCTCTGCCCCCCAGGTTCAAGCGATTTTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGTGTGCCACCACACCTGGCTAATTTTTTGTAATTTTAGTAGAGATGGAGTTTCACCATGTTGGCCAGGATGGTCTCGAACTCCTAACCTCAAGTGATCTGCCTGCCTCGACCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCATCACGCCCAGCCAGAATACTTCATCAGCCCCCTGCTGTGTGTGCTTTGGGAAGAGGTGCTGTGTCTTTCCAGGGAAGAGAAGTTTTCCTTATCTGTAAAATAAGACTGTTACCCTTTTCCCAGTGGGCAGCATGGCTGACTATCCTTTTTTTTGCCTTTACGTGAGGCAGTAGTGCCCTGGAATTGATAGCGGTGGTGTGTATGTGTGTGTTTTCTTGAGTGTGCGGGAGTATATAGGAATCTCACAGTAGGATGGAATGACTTTGGGGTACGTGAATGTGGGAATTATCGTCAGCCCTGGGTTCTCATGCCTTCTTTCTTTTCCATGAG
Seq C2 exon
GTCTTTACAGGGACCCAGTCTGCCTTCAAGAAAAGACAGAAGTAGAAAGGGTGGTGGCTGACTGTCTGACAAATTGTTATCAGGTATGCAGGAAGTATATCCTTCTCCAAAATATCATACTTGCATCACCAGGTAGACACATTTCCTTCTACACAGAATTATCTTCAGAGCTTCTTAAAGCAAATAAAGCCTCCTTCAAGGACTGAGTCCCTAGTCGAATTCCCGGAAGGAGTGGAGCCTGTCATATTGGTGAGGGTTTGCCTTGAATGTCATCCCAGTATTTCAATATTGATTAATTAGTCTTCCCTCATGGTCCCAACTGCATAGTTTTTATTTTGTTGAGTGTTCTGACACATGGTAAGGGACATGAAAGTATCCTTTGAGATAATCTTTCCATTCATCAGTGTTTATCTAGCATCTGCTCAAGAGTGTGCTGCAGTGGAGGGAAATCAGATGACCTCCCAGTCTGGTTGTGTTACATACAATCATGTGTAAGAAGTGCCATTCAAGCCGTGTCACTGGAGGGGACTGACAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174652:ENST00000588221:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAGCCACTGATTTGTCC
R:
TTGGGACCATGAGGGAAGACT
Band lengths:
344-1109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains