HsaEX0073288 @ hg38
Exon Skipping
Gene
ENSG00000174652 | ZNF266
Description
zinc finger protein 266 [Source:HGNC Symbol;Acc:HGNC:13059]
Coordinates
chr19:9418505-9420218:-
Coord C1 exon
chr19:9419952-9420218
Coord A exon
chr19:9419217-9419299
Coord C2 exon
chr19:9418505-9418631
Length
83 bp
Sequences
Splice sites
3' ss Seq
CCTTCTTTCTTTTCCATGAGGTC
3' ss Score
-2.69
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GATACCGTTAACCCTGGATAAAGAGAATGGAGGTTACCTCTGTCCGTGTAGATTCCTAAGCTGTCCTGGAGTGATCCTTGGAGTAAAGGAAAGGTGCTTTGAAGCACATTCAGCCATCAGCCCTGTGGGATGGCAGCCACTGATTTGTCCTATGGTAAGTCCTGTTTCTGTTCATTTTCAGATACCCTGCTTTAGGTGTCCCCCCCCACACAGTATGGAGTCCAGTGGCCTGTGCCTGATCATTCACGCTGCAGCTTCATTTCTGAG
Seq A exon
GTCTTTACAGGGACCCAGTCTGCCTTCAAGAAAAGACAGAAGTAGAAAGGGTGGTGGCTGACTGTCTGACAAATTGTTATCAG
Seq C2 exon
GATTCAGTGACTTTTGATGATCTGGCTGTGGACTTCACCCCAGAAGAATGGACTTTACTGGACCCAACTCAGAGAAACCTCTACAGAGATGTGATGCTGGAGAACTACAAGAATTTGGCCACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174652_MULTIEX2-1/3=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAGCCACTGATTTGTCC
R:
GTGAAGTCCACAGCCAGATCA
Band lengths:
176-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development