HsaINT0186643 @ hg38
Intron Retention
Gene
ENSG00000174652 | ZNF266
Description
zinc finger protein 266 [Source:HGNC Symbol;Acc:HGNC:13059]
Coordinates
chr19:9418505-9419299:-
Coord C1 exon
chr19:9418762-9419299
Coord A exon
chr19:9418632-9418761
Coord C2 exon
chr19:9418505-9418631
Length
130 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
GCATGTGTGTGATGGTTTAGGAT
3' ss Score
6.87
Exon sequences
Seq C1 exon
GTCTTTACAGGGACCCAGTCTGCCTTCAAGAAAAGACAGAAGTAGAAAGGGTGGTGGCTGACTGTCTGACAAATTGTTATCAGGTATGCAGGAAGTATATCCTTCTCCAAAATATCATACTTGCATCACCAGGTAGACACATTTCCTTCTACACAGAATTATCTTCAGAGCTTCTTAAAGCAAATAAAGCCTCCTTCAAGGACTGAGTCCCTAGTCGAATTCCCGGAAGGAGTGGAGCCTGTCATATTGGTGAGGGTTTGCCTTGAATGTCATCCCAGTATTTCAATATTGATTAATTAGTCTTCCCTCATGGTCCCAACTGCATAGTTTTTATTTTGTTGAGTGTTCTGACACATGGTAAGGGACATGAAAGTATCCTTTGAGATAATCTTTCCATTCATCAGTGTTTATCTAGCATCTGCTCAAGAGTGTGCTGCAGTGGAGGGAAATCAGATGACCTCCCAGTCTGGTTGTGTTACATACAATCATGTGTAAGAAGTGCCATTCAAGCCGTGTCACTGGAGGGGACTGACAGTGA
Seq A exon
GTGAGTGTGGATAGAGAGGACCTCCTGGGGTGGGCAATGTGAGCCCTCAGACTCTGTAGGTATTGCATTTTGCAGTGAACACTGGTAGACATGTTTTGTGGCTCAAGCCAGCATGTGTGTGATGGTTTAG
Seq C2 exon
GATTCAGTGACTTTTGATGATCTGGCTGTGGACTTCACCCCAGAAGAATGGACTTTACTGGACCCAACTCAGAGAAACCTCTACAGAGATGTGATGCTGGAGAACTACAAGAATTTGGCCACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174652:ENST00000588221:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCTCAAGAGTGTGCTGC
R:
TGGCCAAATTCTTGTAGTTCTCCA
Band lengths:
243-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains