MmuINT1035521 @ mm10
Intron Retention
Gene
ENSMUSG00000060510 | Zfp266
Description
zinc finger protein 266 [Source:MGI Symbol;Acc:MGI:1924769]
Coordinates
chr9:20505052-20506065:-
Coord C1 exon
chr9:20505977-20506065
Coord A exon
chr9:20505179-20505976
Coord C2 exon
chr9:20505052-20505178
Length
798 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
ACGTGTGTGTAATGGTTTAGGAT
3' ss Score
7.28
Exon sequences
Seq C1 exon
GCCTTCTTTCTAGAGAGCCTATCTACGTCTACGAAGCAAACATAGAGGTAGACGGGACGGTGACTGACAACCAGGCAAATTGTTACCAG
Seq A exon
GTAAAGAGAGAGGATATCATTCTACCAGATACAACTTCCCATCTGTGATCTAGAAGCATTTCCTTCTAGAGTCTGGAGTTGACACAGACTCAGTCTCTAGGGCTTTCTTAAAGGAAGTACATTCTCACTAGGGGGTGAAGGTTATCTTGTTGAATTTTCCTGGGGAACAGAGCCTTGCAAATCCTTCTAGCATTTTTGTTATTGCTTATTAACGTGTTTGCCTGGCTGGGGATTGAGCCAAGGCCTTTTTATCCATGCTAGGCACATGCTTTACTACTGAGCTCTATCCCCAACTTCACTAATTAATGTTTGCTTAGATAGAGTCTGGCTATGTAGCCTAACCTTGAACTCGCTAGCCCTGGCTGGTCTCAGCCTCCCTATCCAGTGTTGGGGATTACAGACATGGGCCCCCGCTAACTAATCTTGAGCTTCACTTACAACTGCATGTCTTTTGTTTTGTTGAGTCTTCTGACAGTAAGTCAGGTGAGAGCACCCTTTTCTCAGAAGCGCTGTTTATCCCATATGTACAGTTTGTTTAGGACTGTGCTGCAGTGAGACAGTAGGACCAGAAGAGCTGCTAGCCTGGCTGTGCTGGTAGAAATCATGCTTATAAAGTCATGGAACAGTAGAAGGTCGGCAGAGAGTGGGTGTAGAGAAAAGAGTTCCTGGGCCACGGAAGCCTGCAGCTTGAGGACGATCTGAGAACCATGTCTAGGGATTAGGTCCTCCTTCCTAACTTTCCATTGAGTACTACAAGACTGTTACTTGGCTCAAACCAACGTGTGTGTAATGGTTTAG
Seq C2 exon
GATTCAGTGACCTTCGATGATGTGGCTGTGGAGTTCACCCCGGATGAGTGGACTTTACTGGACCTGACTCAGAAGAATCTATACCGAGAGGTCATGCTGGAGAACTACGAGAACTTGACTTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060510:ENSMUST00000174462:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCTTTCTAGAGAGCCTATCT
R:
ACTGAAGTCAAGTTCTCGTAGTTCT
Band lengths:
214-1012
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types