HsaINT0187659 @ hg19
Intron Retention
Gene
ENSG00000171469 | ZNF561
Description
zinc finger protein 561 [Source:HGNC Symbol;Acc:28684]
Coordinates
chr19:9727721-9728855:-
Coord C1 exon
chr19:9728767-9728855
Coord A exon
chr19:9727848-9728766
Coord C2 exon
chr19:9727721-9727847
Length
919 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GCATGTGTATGATGACATAGGAT
3' ss Score
4.24
Exon sequences
Seq C1 exon
GGTTTTTTTCCAGGGAACCAATCTGCCCTTTTGAAGAAAAGACAAAGGTAGAAAGGATGGTGGAGGACTACCTGGCAAGTGGTTATCAG
Seq A exon
GTAAGCAGAAAACGTACTGTTGTTAAAAATGATATGCTTTCATCCAATAGGTAGACAGATTTCTTTCTAGACAGACTCATCTTCAGAGTTTTCTTAGAGCAAATGAAGCCTTACTCAAGGACTGAGTCCCCAGATGAATTTCCCCAGGGAATGAAGTCTCCTATACATAAAATGTTAACTTGAAAATCAGTCCAGTAGCTCAGTAATTACTACTTAAGCTTGACCTTCATGGTGCCAACTGCATCTTTCTTACATTGCTGGGTGCGGTGACGGATGATAAAGCAGATGAAAGTGTCCTTTTATCAAATCATTCACTTATCAGCATTTATCAGGTATCTGCAGTGTGCTGAGGAGTGTGCTGCATAGACACCAATGGGACAGGAAGAGCTCCTAGCCTGGTTGTGCTGAGATCAAGCGTAAGCAGTGTGCAGTGGCTCATGCCTGTAATTCCAGCTACTCAGGAGACAGAGGTGAGAGGACCACTTCAGCCCAGGAGATCGAAGCTGTAGTAATCAGCAGTTGTGCCTGGGTGACACAGTTGGACCCTGTTTTTATATATAAATAAATAAACAGATTAGATAGATGATAGATAGAGGAAAATTCATCTTTAGGAAGTACTGTTCTAATCAAAATAAAAATAAAATTTAAAATTTAAAAATACAAATATTAAAAAATTAAAAATAGATCAGCAAAAAAAGATTTAAAAAAATTTTAAAAAGTGCTGTTTAAGGCATATGCCTGTAGGAGGTCAACCTTGAGTGTTTAGACACAAGAGCTCCTGAGACATTAAACCCTGGAGTAGATCATGGGAGACCTGACAACCACGTGTAAGTGAGTATAAGGTTCCCCTTCATCATTCTCCAGTGAATATTGGTGGAAGTGTTCATTGGCTCAAACCAGCATGTGTATGATGACATAG
Seq C2 exon
GATTCAGTGACGTTTGATGATGTGGCTGTGGACTTCACCCCAGAGGAGTGGGCTTTACTGGACACAACTGAGAAATACCTCTACAGAGATGTGATGCTGGAGAACTACATGAACCTGGCCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171469-ZNF561:NM_152289:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF080087=Viral_cys_rich=FE(54.7=100)
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCAATCTGCCCTTTTGA
R:
ACAGAGGCCAGGTTCATGTAGT
Band lengths:
201-1120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)