HsaEX0073936 @ hg19
Exon Skipping
Gene
ENSG00000171469 | ZNF561
Description
zinc finger protein 561 [Source:HGNC Symbol;Acc:28684]
Coordinates
chr19:9724697-9728855:-
Coord C1 exon
chr19:9728767-9728855
Coord A exon
chr19:9727721-9727847
Coord C2 exon
chr19:9724697-9724779
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCATGTGTATGATGACATAGGAT
3' ss Score
4.24
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GGTTTTTTTCCAGGGAACCAATCTGCCCTTTTGAAGAAAAGACAAAGGTAGAAAGGATGGTGGAGGACTACCTGGCAAGTGGTTATCAG
Seq A exon
GATTCAGTGACGTTTGATGATGTGGCTGTGGACTTCACCCCAGAGGAGTGGGCTTTACTGGACACAACTGAGAAATACCTCTACAGAGATGTGATGCTGGAGAACTACATGAACCTGGCCTCTGTGG
Seq C2 exon
AATGGGAAATACAACCTAGAACCAAACGGTCATCACTTCAGCAGGGTTTTTTGAAGAATCAAATATTCAGTGGGATACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171469-'4-12,'4-10,15-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF080087=Viral_cys_rich=FE(54.7=100)
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCAATCTGCCCTTTTGA
R:
ATCCCACTGAATATTTGATTCTTCAA
Band lengths:
152-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)