HsaEX0073935 @ hg19
Exon Skipping
Gene
ENSG00000171469 | ZNF561
Description
zinc finger protein 561 [Source:HGNC Symbol;Acc:28684]
Coordinates
chr19:9727721-9728855:-
Coord C1 exon
chr19:9728767-9728855
Coord A exon
chr19:9728297-9728434
Coord C2 exon
chr19:9727721-9727847
Length
138 bp
Sequences
Splice sites
3' ss Seq
CACTTATCAGCATTTATCAGGTA
3' ss Score
0.24
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGTTTTTTTCCAGGGAACCAATCTGCCCTTTTGAAGAAAAGACAAAGGTAGAAAGGATGGTGGAGGACTACCTGGCAAGTGGTTATCAG
Seq A exon
GTATCTGCAGTGTGCTGAGGAGTGTGCTGCATAGACACCAATGGGACAGGAAGAGCTCCTAGCCTGGTTGTGCTGAGATCAAGCGTAAGCAGTGTGCAGTGGCTCATGCCTGTAATTCCAGCTACTCAGGAGACAGAG
Seq C2 exon
GATTCAGTGACGTTTGATGATGTGGCTGTGGACTTCACCCCAGAGGAGTGGGCTTTACTGGACACAACTGAGAAATACCTCTACAGAGATGTGATGCTGGAGAACTACATGAACCTGGCCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171469-'4-10,'4-7,8-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF080087=Viral_cys_rich=FE(54.7=100)
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCAATCTGCCCTTTTGA
R:
CACAGAGGCCAGGTTCATGTA
Band lengths:
202-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)