HsaINT0186643 @ hg19
Intron Retention
Gene
ENSG00000174652 | ZNF266
Description
zinc finger protein 266 [Source:HGNC Symbol;Acc:13059]
Coordinates
chr19:9529181-9529571:-
Coord C1 exon
chr19:9529438-9529571
Coord A exon
chr19:9529308-9529437
Coord C2 exon
chr19:9529181-9529307
Length
130 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
GCATGTGTGTGATGGTTTAGGAT
3' ss Score
6.87
Exon sequences
Seq C1 exon
TGTTTATCTAGCATCTGCTCAAGAGTGTGCTGCAGTGGAGGGAAATCAGATGACCTCCCAGTCTGGTTGTGTTACATACAATCATGTGTAAGAAGTGCCATTCAAGCCGTGTCACTGGAGGGGACTGACAGTGA
Seq A exon
GTGAGTGTGGATAGAGAGGACCTCCTGGGGTGGGCAATGTGAGCCCTCAGACTCTGTAGGTATTGCATTTTGCAGTGAACACTGGTAGACATGTTTTGTGGCTCAAGCCAGCATGTGTGTGATGGTTTAG
Seq C2 exon
GATTCAGTGACTTTTGATGATCTGGCTGTGGACTTCACCCCAGAAGAATGGACTTTACTGGACCCAACTCAGAGAAACCTCTACAGAGATGTGATGCTGGAGAACTACAAGAATTTGGCCACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174652-ZNF266:NM_006631:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCTCAAGAGTGTGCTGC
R:
TGGCCAAATTCTTGTAGTTCTCCA
Band lengths:
243-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)