HsaINT0186658 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr12:133757995-133758616:+
Coord C1 exon
chr12:133757995-133758272
Coord A exon
chr12:133758273-133758531
Coord C2 exon
chr12:133758532-133758616
Length
259 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
3' ss Seq
CACTGTGCTCTCTCTTCTAGCAT
3' ss Score
11.2
Exon sequences
Seq C1 exon
CCGGCGCGGGAGTAACTCCTCGCAGAGGCCTCTGGGAGTTGTAGTTTTTTTGCCTTTGCCTCTCCATGACGCAATTCCTGTGCGACATACGTAGCGGCCGCCATTGTTCCGCGCCGATGGCGAGATCCTTGTTCCTCAGATAGCGTTCATCGCCCGTCGTGGTCAACGGGCCAGCCGAGTCTGGAGTGGTTGCGAACCCTTCTGGCTGCAGATCTGGAGGTGGAGGCAGTACCCTGGACTCTATTCTGCTGCCCCTTCAGGGTTTGGAGGAGCCGGAG
Seq A exon
GTGCGGAATTCCTCCGGTTTCAAGGCGGCGGGACGGGACAGAACTAATCTGCCTTAGCTCTCTCCTGCTGCTGACCCGGGGCGGTTGCCTGACCCTAACCTGTGTGTTGGTGAGGGTGTGGAGATGGTGAATCCCGTGCTGTGGGAGGGAAGGAGCCTCAGCTCCGAGAATGGCAGGCAGCCCTGGTGCCTCGGACCCTCCCCCTCTGGGTTTGGGGACTGCTGGGTGACCTCTTTCTTCACTGTGCTCTCTCTTCTAG
Seq C2 exon
CATCCCTCGCGTCCTGTCACTTCCAGCGAGGCACACAAAACTGACCGTAGGGATGGCCACCAGGGTCCGGACAGCTTCTATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
-ZNF268:NM_152943:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCTCCATGACGCAATTC
R:
ATAGAAGCTGTCCGGACCCTG
Band lengths:
303-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)