HsaINT0186658 @ hg38
Intron Retention
Gene
ENSG00000090612 | ZNF268
Description
zinc finger protein 268 [Source:HGNC Symbol;Acc:HGNC:13061]
Coordinates
chr12:133181409-133182030:+
Coord C1 exon
chr12:133181409-133181686
Coord A exon
chr12:133181687-133181945
Coord C2 exon
chr12:133181946-133182030
Length
259 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
3' ss Seq
CACTGTGCTCTCTCTTCTAGCAT
3' ss Score
11.2
Exon sequences
Seq C1 exon
CCGGCGCGGGAGTAACTCCTCGCAGAGGCCTCTGGGAGTTGTAGTTTTTTTGCCTTTGCCTCTCCATGACGCAATTCCTGTGCGACATACGTAGCGGCCGCCATTGTTCCGCGCCGATGGCGAGATCCTTGTTCCTCAGATAGCGTTCATCGCCCGTCGTGGTCAACGGGCCAGCCGAGTCTGGAGTGGTTGCGAACCCTTCTGGCTGCAGATCTGGAGGTGGAGGCAGTACCCTGGACTCTATTCTGCTGCCCCTTCAGGGTTTGGAGGAGCCGGAG
Seq A exon
GTGCGGAATTCCTCCGGTTTCAAGGCGGCGGGACGGGACAGAACTAATCTGCCTTAGCTCTCTCCTGCTGCTGACCCGGGGCGGTTGCCTGACCCTAACCTGTGTGTTGGTGAGGGTGTGGAGATGGTGAATCCCGTGCTGTGGGAGGGAAGGAGCCTCAGCTCCGAGAATGGCAGGCAGCCCTGGTGCCTCGGACCCTCCCCCTCTGGGTTTGGGGACTGCTGGGTGACCTCTTTCTTCACTGTGCTCTCTCTTCTAG
Seq C2 exon
CATCCCTCGCGTCCTGTCACTTCCAGCGAGGCACACAAAACTGACCGTAGGGATGGCCACCAGGGTCCGGACAGCTTCTATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090612:ENST00000536435:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCTCCATGACGCAATTC
R:
ATAGAAGCTGTCCGGACCCTG
Band lengths:
303-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains