HsaINT0186744 @ hg19
Intron Retention
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:25953]
Coordinates
chr15:56993371-56996465:-
Coord C1 exon
chr15:56996319-56996465
Coord A exon
chr15:56993437-56996318
Coord C2 exon
chr15:56993371-56993436
Length
2882 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
ATAAATATAATCTTTTATAGATA
3' ss Score
6.04
Exon sequences
Seq C1 exon
GTAATTCAAAAATGGCAGAACTGTTTATGGAATGTGAAGAAGAGGAGCTGGAACCATGGCAGAAGAAAGTAAAAGAAGTTGAGGATGACGATGATGATGAGCCAATCTTTGTTGGCGAGATATCAAGTTCAAAACCAGCAATTTCAA
Seq A exon
GTAAGCATTTACTTTTAGTGAAACCAAGCTTTATAAGGTATTATTTCTAGTAGAAAAACTTGTGAACTGTTTAATAGGTAGTTGATGTTCATGTTCCACTGTAAAGAGGAACATGATTGGGGACTTGAGGAAGGAGGTAAGAGATTAAATATCAGATGTCAGAAAAGAGAAATGGACTGAGATTAGCTGGTGACCCTGGAGGTCTTCTGAGATTAGAAATCATAATTTTTAATGGAGTTAAGTAATTATTTATTTATTTATTTATTTTGAGACAGGGTCTCACTCTGTCGCTAGTCTGGAGTGCAGTGATGCAGTCACAGCTCACTGTAGCCTCAACCTCCTTGGCTCAAGCGATCCTCCCACCTCAGCTTCCCAAGTAGCTGGCACTACAGGCATGTGTTACCATGCCTGGCTAATTTTTGTATTTTTTGTAGAGACAGGGTCTCACCATGCTGCCCAGGCTGCTCTCGAACTCCTGAGCTCAAATGATCCACCTGCCTTGGACTCCCCAAGTGCTAAAATTACAGGTGTGAGTCACTGCACCTAGCCTTAAGTAACATATTTATCTGTTTATTCTTTTTCATTTTTCTCCAACCCAGAAGAGAAAATAAAACATTTGGAATGCTTTGCTTAAAATTTCAGAATATACTAAGTGAGTTTTTGTTAGTCTCAAACGGGACTTCTCACATCCAGTCCTCACTGCAATGTCATCTATACGTGGCTACAAAATGTATAGGTGGTGAATGATTGCACAGACTCTGGCCTGTGTACCAATAGAAGCTGCAGCTTCTGACCATATCCGTCTTCCAGCAACTCCTTTTTATATTCATGAAAGAGAATGGCGCTGTCTACAGCCACTGTACTTGGATGATGTAGCATTTAGTACATTTAAATCCTTAAGGCTTTTGGGCAGAACAACTTGGTACCTTTGTGGCTTATTAGCTTTGAATTAGAGAATTGGGCTTGACATTGTTATAATATTAACGTGCAGATACTGATGACATTTGTTAAAATGTCCACTCAAAAATGTATGACAGTGCAGAGAAACAATGTACAAATTTCAGGGAGAAAGAGAAAATAGATCCTTTTCCATTTCATTTACTTGTTTGTTTGAAGCCAGGAGAATTTACCAAAGAATTTTATGTACCCAGTTTACCAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTACTTACCATGGTAGTGCTTAAAAGTGTGATTAAGAGACCAAAATTTTTTGAAAGCCTAGTTCTTGCTTCACTTACCTCTAAACTTGGATTGGCACCTTTATTCAGTTTTATCAGAGAGAGAGTAATTTCACCAATCGAATTTTCAATACTGTTTCCTGGGGCACATTGGTCATCTCTCATGGAATGCTAAGTGGAGTGCCACTTGGATTATAAAATGAATTAGGCATGATGGCATCGTCGGTGATAGTGGGACATAATATTCTATTGGTTATTGTTTTATACTGAAATATTATATTGCAAAATTCAAACTCTTATTGAAAACATGACAGTTAAGATTCAAGGTGAATTTATACTGATTGTAGATGACTCTTCATGGTATTCGGGTAGAACACTGTACATTAGTTTTAAAATAATTCCATCAAGAAGGGGATTAACCCCAACAGAATTTCTTTTCTACAGTGTTAAGGTGAATAATTTAAATGGTTTTATTGTTGTTTTATTTGTAAGCCATAAAATATGTTAACATATGGAACATGAGTTAAATGTTTATATAAAACTGCAAGAAAGGAGGGCAAAAACTTGTGATCCATAGACTACACCCACTAAATAGTACTACAGCAATAGCTCTTTCATGGTTTGAGTAAATATTTAATCCTGAATTTCTGAATGAAAACAGTTTCAAGTTCTTTGAGTAGATCTTTCTCTAATAAGACTTCTGTAGTGTTTAATTACAGAGCACTGCATTGACCTTATCAGAAAACAACCATATTTCTGTGTGAACCATTATTTTATAGAATTACTTAATGGGATCTGGTTTCTTTCTACTGTGAGGAAGATAAAAGAAATTTTTATGAGATTTGGTGGGTGGTTTTTTTTTTTTTTTTTGGGTGCTTTTTACCTTTTTCTAACCAGCAATTTTAGGCAAATCCTCATGCTTCCAAACTATAATTTGATAAGCTAGAAGTTACAGAGTTTACATGCATGCAAGAATGAGGAACTTTAAATTGATCCTCAAAGTCATGGCAGGCTCAGATTGACTTCTGGTGTAGTGGTAAATTTGAAACCTCTTAACTAATAAAATGCTATGATGAACTATTGGTTCACTTTAGTCTGCAATCTCTGATAGTTTTTCTTTTTTAACTCAAAACTAATAGTAGATAATCCGATGAGATTTTCTGTAATGCAACTTCAAGGCTTTTAGACGAGTGAATGCAGTGTAGAGGTTGGGCAAGGATTTGATTTTGAATCATAGGAACCTGACTGTATGTAACAGCCCTGTCATCATGCAAAGAAAGATATACATTTAAATTATAGGTTATATATAAATATGTTTTTGGAAAATTTTTATCAAGTATGTGATGTTTCTTTGCAAGCACAATGTTTTGACTCACCTGTAGTCAGATTTGTCATTTCCTTCTGAATTTTGGATTTTGAGTTACAATGAGAAAGATTGTTCTTAGTCTGTAAAACAAAACCTAGTTATCTTGTTTCTTTTGTTTCTTTAGTAGGTAAAGATGTATGTGTTTAAAATGAACTATATTCTTAAATCAGTGATTAGTTATATACTCCTTCCATAAATCTGTTTAAATGTTTTCAATTCATGATTTCTATTATCTTAATATGTATTTCATTCAAACAATGTATTTTAAAATAAATATAATCTTTTATAG
Seq C2 exon
ATATTTTGAACAGAGTTAACCCCAGCTCATATTCAAGGGGACTAAAGAATGGTGCACTCAGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871-ZNF280D:NM_001002843:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.705 A=NA C2=0.362
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PU(38.9=28.0)
A:
NA
C2:
PF138361=DUF4195=PD(58.3=91.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)