GgaINT1002102 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NIC1]
Coordinates
chr10:7094922-7098885:+
Coord C1 exon
chr10:7094922-7095072
Coord A exon
chr10:7095073-7098819
Coord C2 exon
chr10:7098820-7098885
Length
3747 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGA
5' ss Score
5.58
3' ss Seq
TTAAATGTAACTTTTGACAGATA
3' ss Score
6.58
Exon sequences
Seq C1 exon
TCTAGTCTCAAGATGGCAGAATTGTTCATGGAATGTGAGGAAGAAGAGCTAGAACCATGGCAAAAGAGAGTGAAAGAAGTGGAGGAGGATGATGATGATGATGAGCCGATCTTCATTGGGGAAATCTCAAGCTCAAAGCCAGCTAGTACAT
Seq A exon
GTAAGATAACATTTTCCATAATTTGACAGATATTTTATAGTGTGAAACTTCAAACTTGTTTTGAAAATATGGAATTTGTAGTGTTAAGATTTAAGAAGTTCTTCATCTTAGAGCTGTTCTTTAGTTTGTTGTCCTGTGCTGAAAATTGGAAATTTTAGTGAATTCTGCCCTAAAATATGAGTTATGTGCAGCTGTCTGTACTAATGAGCTTACATTTCTCAAGTAGAAGCAGAGACATTTGAGGATTTTAGCATTGATGGTATGGTTAAAAGTCTAGTATAGGCAATGCTGAAAGCATGTAATTGCTCTTAATAGAGTTGATATTCAAGTAGATACCTCTCCCCACTAAGGTAAATGCGTGAATTCTTGTCTTCATGCGGCAGTTCCTCTTACTTTTCTCTGCTGCTCATTTTGTGAGTTTAAAGTCAGTCTGAATGTGTGGACATTGTTCTGGTAACTGTCCAAGTGTGTATTAATAAAGGCATAATCAGGAAAAGCATATAATGTGAAAATAACGCGAGCCTCTCTGCTTAGTTAGAGGTTTCTACTAATAAATTCATTCACTCCCTATAAAATAAGAGACTTTTTCATCGAGTTCTGTAGTTTTCTCCGATTGCAGGCAGTACAGGGAATCAGTGTAGGTGCTTGTGGTGACGGCAGATGTGTAAGGATTCAGTGTTTGTCCTGTGCTTGGTCTTTGGCAGGTAAGTGAAGGAGAATGCTTATTTTTGCTGCTTCCGTTGATTTTTTTTTTAGGAATGACAGATTTTGATCCTGTGCGTGGCTTGTAGTCGTTTGTTAAGAAGTTTTTTCCTAAGCATTCTCTGGTTATCAAATATACGAGACTGCATGGTTTCATGCTGTCTGCTTTAGCCTCCATCTCTGCTGTCCTTTTATTTGAGATTGTCATAGGCATTTTCTGAAGGTGTATAGTTTACAGTAATGAATCTCAAGGCAAGGTGTTCAACTAGGCTCTTCCCCTCACTCTGCTGTGTGGACTCTGGAGCTATTACTATCTGTTCTGTCATTTTAGATCTTATTACTTCAATCTTGCATCTGAGCTCTATTTACTTTGCTCCTTACTCATTGGGAGTTATCTTTAATTATGCACTGGCTTAAAAATCTTGAAAATGATGTTTTAAGAATTAAAGAAGTTGATGTTAGAGCTCACCTAAAAATAGTTATTAAGGGTTAATGCTTTTGAATGCTTGAAAAATAGTCTAGATCCTCTTGAAAATTTTGAAGAATATTTGAAATTTAGTCTAAAAAGCTTTCTGAAGTTGTAAGCTTCCAAAAGGAGAAAAAAAGAATACCCTTTACTGTTATGTTATGAGGTCTAAGACCTCTGGATTACTGTGATTTGTTAGCATTAGATCATGGAATTGGACCATTATTAATGTGCTAGACATACATTAGAGTAATAAATATGCTAAGTTTCATTGCATCATTCTAGTCTAAATATTTTTTCAAGTCATAAAGGATAGAAATGTGTTGCAGGTGAGAACTATATTTTTTCATACAATTCAGTAACTAAAAGAACTTTGCTAGAAGATAGGCTTGCATTGTATGCATCTTATTCTAGAGCTGTCCATACTCAGTCCTGACACAAATAAAATCACTTATGATACAACTTCTTACTTTCTCTTTTCCTTCCCTTTCTCAATTTTTCTCTTTGTAATCTCCTACTTCACTATCAAAAACAGCTATGGAAGAATGACCTCAGTTCTTTGGCTTGTAAGTAGTACTACCTGGCAGTAGTCAGGCTTCAGTTTGCAGAATCTTTGTTGGTAATAGGCAAGCCACAGCAAACTCCGCTTTCCTTACCACTGCTGTTTAGTTTTTACACAAGAAAATTCCTGTCCGATCAGATGGCAAATGGAGACTTGCATGTTATTCCTAATTTTTTAGAAAGGTATGTTTTCTGCAATACATGGCCATCTTTTTAACCTTCTACTGACAGTGCAGTTATTAACTGTTACACAGACTAATGTGGAAAACTGAAAGGAAGTAGTTAAGGACCCCAGCTTTGACATGCTGACACAATGCATATATAGTCAAGTGTCTCTTCTGCTTTGGAGGGCTAGTTGAGTGGGATGAGAAGTAATTCACACTTTATTTCTTTTAATGTTTCTTACAACTGTTCTTTTTTTTGCAGCTACTGTGTGTTTTCTTGCTTACTTTTTCATAATCGTATAAACCTGTCCTTTGTTGCTACTTTAATATGTTACTGTTTGATACTGTTTATTCTAAACAGGACAAATAATACTTAGGTGAGGAGAAGGAGGAGCAAGTCAAGTCTCTAAGTCAGTTGTCATGCAGATTTAGTTCATAAATTCAAAGCACTGATTATCTGAAATGTTCTTTTTTTAAGCAGTAAATTCTGTCTGTATACTTTCAGTATACGAGTTTTCAGTGCATCAGGCTGCCAGAAGCTGAAAATGTTTTGTGAACCACAACTTGTAGGATTTTACAATAGCTGTTTTTTTTATTTTCGTTATTCTCTTTGGTTGGGGTGTTTTTTTTTTTGTGGGTTTTTTTTTTGTTGTGGGGATAAACAAAGGTTTTTGTTTTGTTTCACTCTGGAATTTAAATGTGTGGTATGGATTTGCTATCAGACATGAAAATATACATTTTTCAGGTGAATCCCCAATTAAGCTAATCCTGGCTCACAGATGATGTTGTTTGAAGTAGGAATAGTATAATTCTTGCAGAAGTAAATTTATCATATCTTAAAAATGCAAACCTGCTTGGATCTGTTCGTTGCAGCTGCTTTTTCATTAGTATTATCTACGTAAGGGTAACAGGTTGAGAGCTGTGATCTGAGCTCTGCTGCCATTAGATTTATTTATCAGTCTGAGTACTATATGAACTTATCTGTGAAAACAGCCTTAAGGTGGTTAAGCACAATTTATAGATGTTCTAAGATCTCTTGCTTGAGATTCTGATGTAATTTGACCCTGGTTTGAGAGAGTACTCTTGATCTTGTTGATTTGGAACTTTAATATATGTGTTTTCACATGTTTGAGCAAGAAACTTGGCAGCAACATGAAATGAATTGAGAGAATCTGGTGGTAGAAGAATATTTTGATTTGGTCAATGTTATTTTAACATTCTAGAGTTAGCATAAAACCCCATGTGAAGGTGGACATAGCTGAGGAATACTGGTTAGGGAAGAAGCATCAAATCTAAGAAGTTTAACTTGTTTCCAAGAAATTGGAATTCTAGTAATAGACTGCTATCTAGGATATGTTAGAAAATCAGTCCACTTATAATACAACTCCAGTATGACTCCTTTGTCTTCTGTCTTTGATTTCGTTTGGTGCTGGAAACTGGAGTTGGGAAATATTTAGAGAAAATGGTTCCTTTTCTCTGAAGCAGTTGTACCAGTTGGGGAACTTCTTATGATGCATGCTACAAAGAGAAGTGAATAAATGCATTTCTTACAATCAGATGAGCTAAATATTAATGAAATGTTCATACTTTGCACTCTTATTTGTATGTTCGTCTGTCTCTAAGAAAATAAAACTGAGATTCTTAGGTAAACTAGCCAGCTTTAGAGGAGTAGAACAGATCTTAATGTGTACAAATGATGTTTTGTTTTGCCAGGCTTTTATTTTAGAAATAATAATATAACTTACAAGTCAAATCCTAATTGGCTTAATTCATGGTTATGAATGCTGCTTTTAATTTGCAAAGAGATAAAGCTATTAATTTAACTGCAATTAAGTTAAATGTAACTTTTGACAG
Seq C2 exon
ATATATTGAACAGAATCAACTTCAGCTCATCACGAAGGCAGATACAGAATGGTGCACCCAGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375:ENSGALT00000023225:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.431 A=NA C2=0.478
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PU(8.5=27.5)
A:
NA
C2:
PF138361=DUF4195=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]