GgaEX0021120 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NIC1]
Coordinates
chr10:7094922-7099146:+
Coord C1 exon
chr10:7094922-7095072
Coord A exon
chr10:7098820-7098885
Coord C2 exon
chr10:7099004-7099146
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTAAATGTAACTTTTGACAGATA
3' ss Score
6.58
5' ss Seq
GAGGTATTA
5' ss Score
6.46
Exon sequences
Seq C1 exon
TCTAGTCTCAAGATGGCAGAATTGTTCATGGAATGTGAGGAAGAAGAGCTAGAACCATGGCAAAAGAGAGTGAAAGAAGTGGAGGAGGATGATGATGATGATGAGCCGATCTTCATTGGGGAAATCTCAAGCTCAAAGCCAGCTAGTACAT
Seq A exon
ATATATTGAACAGAATCAACTTCAGCTCATCACGAAGGCAGATACAGAATGGTGCACCCAGTAGAG
Seq C2 exon
GTACAGTTACTTCATTCAAGTCTGACAGTCACCATTATGTAACACCTGCCTCCAGTCCCAGTGCCATTCCTGTTTCATCAGTGTTTCAGTCTGTATCCAGATCTACAGCTAGCTCTGTAGCAGTTCAGCCATTGTCTAGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375-'1-6,'1-4,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.431 A=0.478 C2=0.417
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PU(8.5=27.5)
A:
PF138361=DUF4195=FE(13.3=100)
C2:
PF138361=DUF4195=FE(28.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAAGAGCTAGAACCATGGC
R:
GGACTGGAGGCAGGTGTTACA
Band lengths:
171-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]