BtaEX0041217 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001486 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr10:53739709-53755840:+
Coord C1 exon
chr10:53739709-53739855
Coord A exon
chr10:53742866-53742931
Coord C2 exon
chr10:53755723-53755840
Length
66 bp
Sequences
Splice sites
3' ss Seq
AATAATGTAATCTTTTATAGATA
3' ss Score
7.35
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
ATAATTCAAAAATGGCAGAGCTCTTTATGGAATGTGAAGAAGAAGAGTTGGAACCATGGCAGAAGAAAGTAAAAGAGGTTGATGATGATGATGATGATGAACCGATCTTTGTTGGAGAGATATCAAGTTCAAAACCAGCAATTTCAA
Seq A exon
ATATTTTGAATAGAGTAAACCCCAGCTCATATTCGAGGGGAATAAAGAATGGTGCACTCTGCCGAG
Seq C2 exon
GGTTATGTAACGAACTCATCACGAGTTGTTTCTAATAATTCTTCAGAGTTACTGTTTGACTTGACCCAAGATTCAGGATTACCACATTACCAAGCAGGACCAGCACTTTCTATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001486_MULTIEX1-5/6=4-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.350
Domain overlap (PFAM):
C1:
NA
A:
PF138361=DUF4195=FE(11.8=100)
C2:
PF138361=DUF4195=FE(21.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGATGAACCGATCTTTGTTGGA
R:
AGAAAGTGCTGGTCCTGCTTG
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development