MmuEX0053188 @ mm9
Exon Skipping
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72146509-72149813:+
Coord C1 exon
chr9:72146509-72146655
Coord A exon
chr9:72149508-72149573
Coord C2 exon
chr9:72149674-72149813
Length
66 bp
Sequences
Splice sites
3' ss Seq
AAGTATCATTATTTTTTTAGATA
3' ss Score
5.52
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
ATAATTTAAAAATGGCAGAACTCTTTATGGAATGTGAAGAAGAGGAGCTAGAGCCATGGCAGAAGAAAGTGAAAGAAGTCGAAGAGGATGATGATGATGAGCCCATCTTTGTTGCAGAGATAGCAAGTTCAAAGCCAGCTATTTCAA
Seq A exon
ATATTTTGAACAGAGTTAACCCCAGCTCTCATTCAAGAGGAATAAAGAATGGTATACTCAATCGAG
Seq C2 exon
GTTTTACTGCTTCATTCAAGCCTACAAGTCAACGCTGCCTGAATTCAGCATCAAATCCTGTGGCTGCCTTGCCAGTAAATTTTCATCCTGAATCTAGATCTTCAGATAGCTCTGTTATTGTTCAGCCATTTTCTAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535_MULTIEX1-4/27=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.251 A=0.212 C2=0.298
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PU(10.2=28.0)
A:
PF138361=DUF4195=PU(3.7=66.7)
C2:
PF138361=DUF4195=FE(24.7=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTAGAGCCATGGCAGAAGA
R:
AGGCAGCCACAGGATTTGATG
Band lengths:
171-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: