GgaEX0021120 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:8635809-8639943:+
Coord C1 exon
chr10:8635809-8635909
Coord A exon
chr10:8639659-8639724
Coord C2 exon
chr10:8639843-8639943
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTAAATGTAACTTTTGACAGATA
3' ss Score
6.58
5' ss Seq
GAGGTATTA
5' ss Score
6.46
Exon sequences
Seq C1 exon
AGAACCATGGCAAAAGAGAGTGAAAGAAGTGGAGGAGGATGATGATGATGATGAGCCGATCTTCATTGGGGAAATCTCAAGCTCAAAGCCAGCTAGTACAT
Seq A exon
ATATATTGAACAGAATCAACTTCAGCTCATCACGAAGGCAGATACAGAATGGTGCACCCAGTAGAG
Seq C2 exon
GTACAGTTACTTCATTCAAGTCTGACAGTCACCATTATGTAACACCTGCCTCCAGTCCCAGTGCCATTCCTGTTTCATCAGTGTTTCAGTCTGTATCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCATGGCAAAAGAGAGTGA
R:
AAACAGGAATGGCACTGGGAC
Band lengths:
176-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]