RnoEX6036453 @ rn6
Exon Skipping
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78876353-78879249:+
Coord C1 exon
chr8:78876353-78876499
Coord A exon
chr8:78878949-78879014
Coord C2 exon
chr8:78879110-78879249
Length
66 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTTTTTTTTTTAGATA
3' ss Score
11.4
5' ss Seq
GAGGTACAA
5' ss Score
5.13
Exon sequences
Seq C1 exon
ATAATTTAAAAATGGCAGAACTCTTTATGGAATGTGAAGAGGAGGAGCTAGAACCATGGCAGAAGAAAGTGAAAGAAGTTGAAGAGGATGATGATGATGAGCCCATCTTCGTAGCAGAGATAGCAAGTTCAAAACCAGCTATTTCAA
Seq A exon
ATATTTTGAACAGAGTTAACCCGAGCTCTCATTCAAGAGGAATAAAGAATGGTATACTTAATCGAG
Seq C2 exon
GTTTTACTGCTTCATTCAAGCCTACAAGTCAACGCTGCCCGAATTCAGCATCAAATCCTGTGGCTGCCTTGCCAGTAAATTTTCATCCTGAATCTAGATCTTCTGATAGCTCTGTTATTGTTCAGCCATTTTCTAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.540 A=0.522 C2=0.691
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PU(10.0=28.0)
A:
PF138361=DUF4195=FE(11.8=100)
C2:
PF138361=DUF4195=FE(24.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGAGCTAGAACCATGGC
R:
AGGCAGCCACAGGATTTGATG
Band lengths:
177-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]