HsaEX0073341 @ hg19
Exon Skipping
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:25953]
Coordinates
chr15:56985296-56996465:-
Coord C1 exon
chr15:56996319-56996465
Coord A exon
chr15:56993371-56993436
Coord C2 exon
chr15:56985296-56985413
Length
66 bp
Sequences
Splice sites
3' ss Seq
ATAAATATAATCTTTTATAGATA
3' ss Score
6.04
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GTAATTCAAAAATGGCAGAACTGTTTATGGAATGTGAAGAAGAGGAGCTGGAACCATGGCAGAAGAAAGTAAAAGAAGTTGAGGATGACGATGATGATGAGCCAATCTTTGTTGGCGAGATATCAAGTTCAAAACCAGCAATTTCAA
Seq A exon
ATATTTTGAACAGAGTTAACCCCAGCTCATATTCAAGGGGACTAAAGAATGGTGCACTCAGTCGAG
Seq C2 exon
GGTTATATAACAAACTCATCACGAGTTGTGTCTAATAAGTCATCAGAGTTACTGTTTGACTTGACCCAGGATACAGGATTATCACATTACCAAGGGGGACCAACACTTTCTATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871_MULTIEX2-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.705 A=0.362 C2=0.575
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PU(38.9=28.0)
A:
PF138361=DUF4195=PD(58.3=91.3)
C2:
PF138361=DUF4195=FE(21.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCAATCTTTGTTGGCGA
R:
TGCCATAGAAAGTGTTGGTCCC
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)