GgaINT1002105 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NIC1]
Coordinates
chr10:7098820-7099146:+
Coord C1 exon
chr10:7098820-7098885
Coord A exon
chr10:7098886-7099003
Coord C2 exon
chr10:7099004-7099146
Length
118 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTA
5' ss Score
6.46
3' ss Seq
TTTGGAATCCTTTGCAACAGGTA
3' ss Score
5.69
Exon sequences
Seq C1 exon
ATATATTGAACAGAATCAACTTCAGCTCATCACGAAGGCAGATACAGAATGGTGCACCCAGTAGAG
Seq A exon
GTATTATATTGTCCTAATATGGTAATTGAAAAAACGAACGCACACAAAACCCCAACACTTAATGTAATATCTGACCACAAAAATTATATAATGTTAACTTTGGAATCCTTTGCAACAG
Seq C2 exon
GTACAGTTACTTCATTCAAGTCTGACAGTCACCATTATGTAACACCTGCCTCCAGTCCCAGTGCCATTCCTGTTTCATCAGTGTTTCAGTCTGTATCCAGATCTACAGCTAGCTCTGTAGCAGTTCAGCCATTGTCTAGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375:ENSGALT00000023225:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=NA C2=0.417
Domain overlap (PFAM):
C1:
PF138361=DUF4195=FE(13.3=100)
A:
NA
C2:
PF138361=DUF4195=FE(28.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAGAATCAACTTCAGCTCA
R:
GGTCTAGACAATGGCTGAACTGC
Band lengths:
202-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]