BtaINT0165199 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001486 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr10:53742866-53743171:+
Coord C1 exon
chr10:53742866-53742931
Coord A exon
chr10:53742932-53743031
Coord C2 exon
chr10:53743032-53743171
Length
100 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
TGTGTAATTTTAAAATACAGGTA
3' ss Score
6.41
Exon sequences
Seq C1 exon
ATATTTTGAATAGAGTAAACCCCAGCTCATATTCGAGGGGAATAAAGAATGGTGCACTCTGCCGAG
Seq A exon
GTACAGTAGTATTTTACTATTTTTATTTTAAAGTGAAGTATTTTGACATCATTGATTATATAGAAATATATTCAATGTGTTGTGTAATTTTAAAATACAG
Seq C2 exon
GTATTACTCCTGCATTCAAGCCTACAAGTCAACATTACACGAATCCAGCATCAAATCCAGTGGTTGCCTCGCCAGTAAATTTTCATCCTGAATCTAGATCTTCAGATAGTTCTGTTATTGTTCAGCCTTTGTCTAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001486:ENSBTAT00000001949:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.617
Domain overlap (PFAM):
C1:
PF138361=DUF4195=FE(11.8=100)
A:
NA
C2:
PF138361=DUF4195=FE(24.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAATAGAGTAAACCCCAGCTCA
R:
AGGTTTAGACAAAGGCTGAACA
Band lengths:
202-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development