HsaINT0186745 @ hg38
Intron Retention
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr15:56700933-56701238:-
Coord C1 exon
chr15:56701173-56701238
Coord A exon
chr15:56701073-56701172
Coord C2 exon
chr15:56700933-56701072
Length
100 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
TGTGTTACTTTAAAATACAGGTA
3' ss Score
6.72
Exon sequences
Seq C1 exon
ATATTTTGAACAGAGTTAACCCCAGCTCATATTCAAGGGGACTAAAGAATGGTGCACTCAGTCGAG
Seq A exon
GTACAGTATTATTATACTATTTTAATTTTAAAGTGAAGTATTTTGACAAAATTGATTATGTACAAATAATTTCCATATATTGTGTTACTTTAAAATACAG
Seq C2 exon
GTATTACTGCTGCATTCAAGCCTACAAGTCAACACTACACGAATCCAACATCAAATCCAGTGCCTGCCTCACCAATAAATTTTCATCCTGAGTCTAGATCTTCAGATAGTTCTGTTATTGTTCAGCCTTTTTCTAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871:ENST00000559237:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.349 A=NA C2=0.874
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PD(58.3=91.3)
A:
NA
C2:
PF138361=DUF4195=FE(24.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAACAGAGTTAACCCCAGCT
R:
AGGTTTAGAAAAAGGCTGAACAAT
Band lengths:
202-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains