HsaINT0186745 @ hg19
Intron Retention
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:25953]
Coordinates
chr15:56993131-56993436:-
Coord C1 exon
chr15:56993371-56993436
Coord A exon
chr15:56993271-56993370
Coord C2 exon
chr15:56993131-56993270
Length
100 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
TGTGTTACTTTAAAATACAGGTA
3' ss Score
6.72
Exon sequences
Seq C1 exon
ATATTTTGAACAGAGTTAACCCCAGCTCATATTCAAGGGGACTAAAGAATGGTGCACTCAGTCGAG
Seq A exon
GTACAGTATTATTATACTATTTTAATTTTAAAGTGAAGTATTTTGACAAAATTGATTATGTACAAATAATTTCCATATATTGTGTTACTTTAAAATACAG
Seq C2 exon
GTATTACTGCTGCATTCAAGCCTACAAGTCAACACTACACGAATCCAACATCAAATCCAGTGCCTGCCTCACCAATAAATTTTCATCCTGAGTCTAGATCTTCAGATAGTTCTGTTATTGTTCAGCCTTTTTCTAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871-ZNF280D:NM_001002843:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=NA C2=0.894
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PD(58.3=91.3)
A:
NA
C2:
PF138361=DUF4195=FE(24.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAACAGAGTTAACCCCAGCT
R:
AGGTTTAGAAAAAGGCTGAACAAT
Band lengths:
202-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)