RnoINT0167987 @ rn6
Intron Retention
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78878949-78879249:+
Coord C1 exon
chr8:78878949-78879014
Coord A exon
chr8:78879015-78879109
Coord C2 exon
chr8:78879110-78879249
Length
95 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAA
5' ss Score
5.13
3' ss Seq
TGTGTAATTTTAAAATACAGGTT
3' ss Score
6.13
Exon sequences
Seq C1 exon
ATATTTTGAACAGAGTTAACCCGAGCTCTCATTCAAGAGGAATAAAGAATGGTATACTTAATCGAG
Seq A exon
GTACAATATTATTATACTACTTGTAAACTAAAATATTTTGACAAAGTTTATTATGTGGAAATGCATTCAATGTGTTGTGTAATTTTAAAATACAG
Seq C2 exon
GTTTTACTGCTTCATTCAAGCCTACAAGTCAACGCTGCCCGAATTCAGCATCAAATCCTGTGGCTGCCTTGCCAGTAAATTTTCATCCTGAATCTAGATCTTCTGATAGCTCTGTTATTGTTCAGCCATTTTCTAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631:ENSRNOT00000089335:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.522 A=NA C2=0.691
Domain overlap (PFAM):
C1:
PF138361=DUF4195=FE(11.8=100)
A:
NA
C2:
PF138361=DUF4195=FE(24.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAGCTCTCATTCAAGAGG
R:
TGGCTGAACAATAACAGAGCT
Band lengths:
175-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]