HsaINT1047357 @ hg38
Intron Retention
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr15:56701173-56704267:-
Coord C1 exon
chr15:56704121-56704267
Coord A exon
chr15:56701239-56704120
Coord C2 exon
chr15:56701173-56701238
Length
2882 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
ATAAATATAATCTTTTATAGATA
3' ss Score
6.04
Exon sequences
Seq C1 exon
GTAATTCAAAAATGGCAGAACTGTTTATGGAATGTGAAGAAGAGGAGCTGGAACCATGGCAGAAGAAAGTAAAAGAAGTTGAGGATGACGATGATGATGAGCCAATCTTTGTTGGCGAGATATCAAGTTCAAAACCAGCAATTTCAA
Seq A exon
GTAAGCATTTACTTTTAGTGAAACCAAGCTTTATAAGGTATTATTTCTAGTAGAAAAACTTGTGAACTGTTTAATAGGTAGTTGATGTTCATGTTCCACTGTAAAGAGGAACATGATTGGGGACTTGAGGAAGGAGGTAAGAGATTAAATATCAGATGTCAGAAAAGAGAAATGGACTGAGATTAGCTGGTGACCCTGGAGGTCTTCTGAGATTAGAAATCATAATTTTTAATGGAGTTAAGTAATTATTTATTTATTTATTTATTTTGAGACAGGGTCTCACTCTGTCGCTAGTCTGGAGTGCAGTGATGCAGTCACAGCTCACTGTAGCCTCAACCTCCTTGGCTCAAGCGATCCTCCCACCTCAGCTTCCCAAGTAGCTGGCACTACAGGCATGTGTTACCATGCCTGGCTAATTTTTGTATTTTTTGTAGAGACAGGGTCTCACCATGCTGCCCAGGCTGCTCTCGAACTCCTGAGCTCAAATGATCCACCTGCCTTGGACTCCCCAAGTGCTAAAATTACAGGTGTGAGTCACTGCACCTAGCCTTAAGTAACATATTTATCTGTTTATTCTTTTTCATTTTTCTCCAACCCAGAAGAGAAAATAAAACATTTGGAATGCTTTGCTTAAAATTTCAGAATATACTAAGTGAGTTTTTGTTAGTCTCAAACGGGACTTCTCACATCCAGTCCTCACTGCAATGTCATCTATACGTGGCTACAAAATGTATAGGTGGTGAATGATTGCACAGACTCTGGCCTGTGTACCAATAGAAGCTGCAGCTTCTGACCATATCCGTCTTCCAGCAACTCCTTTTTATATTCATGAAAGAGAATGGCGCTGTCTACAGCCACTGTACTTGGATGATGTAGCATTTAGTACATTTAAATCCTTAAGGCTTTTGGGCAGAACAACTTGGTACCTTTGTGGCTTATTAGCTTTGAATTAGAGAATTGGGCTTGACATTGTTATAATATTAACGTGCAGATACTGATGACATTTGTTAAAATGTCCACTCAAAAATGTATGACAGTGCAGAGAAACAATGTACAAATTTCAGGGAGAAAGAGAAAATAGATCCTTTTCCATTTCATTTACTTGTTTGTTTGAAGCCAGGAGAATTTACCAAAGAATTTTATGTACCCAGTTTACCAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTACTTACCATGGTAGTGCTTAAAAGTGTGATTAAGAGACCAAAATTTTTTGAAAGCCTAGTTCTTGCTTCACTTACCTCTAAACTTGGATTGGCACCTTTATTCAGTTTTATCAGAGAGAGAGTAATTTCACCAATCGAATTTTCAATACTGTTTCCTGGGGCACATTGGTCATCTCTCATGGAATGCTAAGTGGAGTGCCACTTGGATTATAAAATGAATTAGGCATGATGGCATCGTCGGTGATAGTGGGACATAATATTCTATTGGTTATTGTTTTATACTGAAATATTATATTGCAAAATTCAAACTCTTATTGAAAACATGACAGTTAAGATTCAAGGTGAATTTATACTGATTGTAGATGACTCTTCATGGTATTCGGGTAGAACACTGTACATTAGTTTTAAAATAATTCCATCAAGAAGGGGATTAACCCCAACAGAATTTCTTTTCTACAGTGTTAAGGTGAATAATTTAAATGGTTTTATTGTTGTTTTATTTGTAAGCCATAAAATATGTTAACATATGGAACATGAGTTAAATGTTTATATAAAACTGCAAGAAAGGAGGGCAAAAACTTGTGATCCATAGACTACACCCACTAAATAGTACTACAGCAATAGCTCTTTCATGGTTTGAGTAAATATTTAATCCTGAATTTCTGAATGAAAACAGTTTCAAGTTCTTTGAGTAGATCTTTCTCTAATAAGACTTCTGTAGTGTTTAATTACAGAGCACTGCATTGACCTTATCAGAAAACAACCATATTTCTGTGTGAACCATTATTTTATAGAATTACTTAATGGGATCTGGTTTCTTTCTACTGTGAGGAAGATAAAAGAAATTTTTATGAGATTTGGTGGGTGGTTTTTTTTTTTTTTTTTGGGTGCTTTTTACCTTTTTCTAACCAGCAATTTTAGGCAAATCCTCATGCTTCCAAACTATAATTTGATAAGCTAGAAGTTACAGAGTTTACATGCATGCAAGAATGAGGAACTTTAAATTGATCCTCAAAGTCATGGCAGGCTCAGATTGACTTCTGGTGTAGTGGTAAATTTGAAACCTCTTAACTAATAAAATGCTATGATGAACTATTGGTTCACTTTAGTCTGCAATCTCTGATAGTTTTTCTTTTTTAACTCAAAACTAATAGTAGATAATCCGATGAGATTTTCTGTAATGCAACTTCAAGGCTTTTAGACGAGTGAATGCAGTGTAGAGGTTGGGCAAGGATTTGATTTTGAATCATAGGAACCTGACTGTATGTAACAGCCCTGTCATCATGCAAAGAAAGATATACATTTAAATTATAGGTTATATATAAATATGTTTTTGGAAAATTTTTATCAAGTATGTGATGTTTCTTTGCAAGCACAATGTTTTGACTCACCTGTAGTCAGATTTGTCATTTCCTTCTGAATTTTGGATTTTGAGTTACAATGAGAAAGATTGTTCTTAGTCTGTAAAACAAAACCTAGTTATCTTGTTTCTTTTGTTTCTTTAGTAGGTAAAGATGTATGTGTTTAAAATGAACTATATTCTTAAATCAGTGATTAGTTATATACTCCTTCCATAAATCTGTTTAAATGTTTTCAATTCATGATTTCTATTATCTTAATATGTATTTCATTCAAACAATGTATTTTAAAATAAATATAATCTTTTATAG
Seq C2 exon
ATATTTTGAACAGAGTTAACCCCAGCTCATATTCAAGGGGACTAAAGAATGGTGCACTCAGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871:ENST00000559237:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.705 A=NA C2=0.349
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PU(12.5=28.0)
A:
NA
C2:
PF138361=DUF4195=PD(58.3=91.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains