RnoINT0167986 @ rn6
Intron Retention
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78876353-78879014:+
Coord C1 exon
chr8:78876353-78876499
Coord A exon
chr8:78876500-78878948
Coord C2 exon
chr8:78878949-78879014
Length
2449 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
GTTTTTTTTTTTTTTTTTAGATA
3' ss Score
11.4
Exon sequences
Seq C1 exon
ATAATTTAAAAATGGCAGAACTCTTTATGGAATGTGAAGAGGAGGAGCTAGAACCATGGCAGAAGAAAGTGAAAGAAGTTGAAGAGGATGATGATGATGAGCCCATCTTCGTAGCAGAGATAGCAAGTTCAAAACCAGCTATTTCAA
Seq A exon
GTAAGCATTTACTTTGAATGTAGGCAGTTTGAAAATGTTATTTTTAGAATTGTTGTCAAATGTTCTTATTCCACCATAAGAAGTTAATGAGAAAAGTTAAAAGATGCACTGAAATTGAGTGCATTAGCTGTCAGTCAGAGTGCTTGGACCTAACATTGTTACATTGTTAAGGTAAGAAGACTGATATACAGTAAGCTGTCTACTCAAAAATATTTCAGTTGGAGCCAGGTGTGGTAGCACACACTTTTATTTACAGTACTAAGGAGACACTAGGGAGGCAGAAGCAGGTGAATTTCTGTGGGTCCCAGGCCAGCCTAGGCTATATAGTGAGACCTGGTCTCAATTGAAAAAAAAATACAGTCTTCAAATCTCATTTATAAAAATATTCTTTCTCATTTTAATGATATTTATCAAAAATGTTAAATAAATCTTTTTTTTTTAAGATTTATTTATTTTATGTACAGCATTCTGCCTGCATATGTGACTGCAGGCCAGAAGAGGGCACCAGATCTCATTATAGATGGTTGAGAGCCACCATGTGGTTGCTGGGAATTGAACTCATGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCTATCAAAAATGTTAATGTATTAAGCATAGTAGTTTTTTTTTTATTTATCTCGGTTAACTAGAAATTTTCTGAAAGCCTTCTTGCTTTTCTTGCCTGTAAGATTGGAATGGCATTTATATATAGTTTTATTATATAGAGAGTAATTTAACCAAGTGAAATGTCAGTATTCTGTTGTAAATAGGTAATTTCTCATGGGCTGCTAACTGGGATATTATTTGGATTGTAAAATGAGTTTAATATGATAGTGTGCATACAATACCAGAATGGTCTTACTTCTTATTTCCTCAGTATTAATTATCTTATACTTCAATTATATTGCAAAATTATTATTTAAAATCTCTTGTTGAAAACATGACAAGATTCAAGTTTAATTTATATTGATTATAAATGACTGTTATACTCAATTATAACAATTATATTTTTTTAAAAAATAATTCTATAAGAAAGAGATTGACCCCAGATGTTTTCTGAATTGTGAAGATGAAAAGTTGAAATAATTGCGTTACTGTTTTATATGGAGGCCATAAGGAATTTCAACATAGGAAATGTGAATTAAATCTTTAAGAACTTGTCTTTTATAGATCACAACTACTAAAGTAGTATATTAATAGTTATTTGATAGCTTGAATATTAATTTTGGTTTTCTGATTGAAAATAATACTAAGTTGAGTTGCTTCTTTTTTTTTTAAATTAGCCTGCTGTATTACTTAATTTGTAAGCACTGCATTAACATTACTGAAAATTTGTAACTATTTTAAAAGTAGGTATTTAGTTAGGTATATATGAATGCACATCTGTAAGTATTCAATGAGTTCCTAGTGCCCAGAGATGCCAGAAGAGGGTATTGTATTTCCTCACCCTTACTTTACAGGTGGTTGTGAGACACTATGTGAGTGGTAGGAATTGAACTGTGTCCTCTGTAAGAATAGCAAATACTCTTAACTACCGAGTCATCGCTCGGCTCTGAAAAATAACCATGATGCGTACCTTTATGCAATTATTTAGTGACATCTAGTTCTTTTCTATCATGAAGAAAAATGGATTTTTTTGTATATGAATTTCAGTGCATCTTTTAACTTTTTCTGAATAAGCAAATTTAAGCAAATCTTCACTCAGAGTTTAGTTTGGTTACTGAGTAAGCTAGATGTTAATAACTTTACATATTCATATGTCTGCAAGAGTAAGAACTAATAACTTTACATATTCATATGTCTGTAAGAGTAAGAACTTCAAACCAATCCTGCAAAGTCATGCCAGTCTTGACTTGTGATGTGGTAGATCAGAATTCTCTTAATGTGTAAGATAGTCTGGTAAACCTTAGATTCAATTTAGTCTGTAACTTATATAACCTTTTGGAACAGAGGTAATGATATAGTCCATAGAGATTCCCCTTTATATAATCTTAGGGCTTTTAGAGCTATGAATAGAATCTGGGGGCTGGGTCACTGTTTAATTTTAAGTCAGAACCCAAATACATACATACAGTTCTTTCACCATACCAAGGAAGGTGTAGACTTCAACACAATGCAACCATATTTAAATATGCTTTTAGAAGATTTTATGGGAACAAAATTTCTTTCCCTTGAAGAAATTTTTTTTTTTTGCTTATGCACTTGGGTTTATCAATATACTTCTGACTTTTGAACATTTAGTTACAATGAGAAAAATTGTGCTTATTCTTTAAAGACAATGTTATAAACTATTTTCAATTTAGTGATAACATTCCCTCTAATATCTGTTTTCAGTTCATAAGTTTTAATATCTCAGTATATATTGCATTCAAATAAATTTAAAGTGTTTTTTTTTGTTTTTTTGTTTTTTTTTTTTTTTTTAG
Seq C2 exon
ATATTTTGAACAGAGTTAACCCGAGCTCTCATTCAAGAGGAATAAAGAATGGTATACTTAATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631:ENSRNOT00000089335:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.540 A=NA C2=0.522
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PU(10.0=28.0)
A:
NA
C2:
PF138361=DUF4195=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]