HsaINT0186759 @ hg19
Intron Retention
Gene
ENSG00000159882 | ZNF283
Description
zinc finger protein 230 [Source:HGNC Symbol;Acc:13024]
Coordinates
chr19:44331473-44332433:+
Coord C1 exon
chr19:44331473-44331596
Coord A exon
chr19:44331597-44332353
Coord C2 exon
chr19:44332354-44332433
Length
757 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GTTACTGTTTTTTCCCCCAGTGC
3' ss Score
9.52
Exon sequences
Seq C1 exon
AGAAGCTCCTCTCCCAGCCTGCGAGCATTTCCAGGCTCTTGTTTCCCATCAGCCTCTGGGTCCAAACTAACCACAGGTCTCTGGGTCCTTTTCCGGTGTCCTTAAGGTTCTTGGACTCTGCATG
Seq A exon
GTGAGTTGGTCGTGTCTGTAGAAGTAATCAGCCCGGGTGAAGCTGGGAGGGCTCGGCTGGCTTTACTGGGGCCCGACTGGAACCGGCAGTGAGGGTGGGGGTGGCATCGGGGGTGCTGGAGGTGGGGAGGGCTGGGTCACGGACAGAGCGTGTCGTGTCCGGATCCTCAAGCCTGTGTGCACGCGAGCAGCCGAGGGACAGTGTGTCTCAGACGGCGTGGCAGGGACGGGGCGTGTCCCCACGGAGGTGGGTGCAGTTGTGAATGTGTGACGGGCTGACAGGGTGCGTGGCCGTATTTGTAAATGTGATTTGCTTTGACCAAATGCTCTAGGTTCCCTTTAGCCTGTCTTCGGGCCTGCCACAATTAAATGACCGCAAGAAAGAAGTCTATGCTAAGCCCCATAATGAACGTTTCAAGCAAGAAGGATGAGAATTTTAGATCTGGAAGTGTCCGCGGGACAGGATCTTGTCAAGACCTGATGGGGAAGTTCTAGAGGTGGGATTCCTAGAAGAGGGGCCTCTAGGAGCTCTTTGGTGGTGAGCTACATGTTTCAGAGCCATTGCAAGCAGACCTCTGTCCCCAAGAATTGCCCTCAACACAGAGACAGACTCTAGCCTCCCTTTTCATTCCGTTTGGTTTTGTGTGGATGAAGGCAGAAGTGGCCCCAGAGGGTGTTTTGCTCTTCTTTTTCTTTTTTAATTAAGTCTGTGACGCGCTAGAAATGCTGATGTCTCATGTTACTGTTTTTTCCCCCAG
Seq C2 exon
TGCTGCCAGGTTGCCAGATTTCTAAGAAGGAGTTTGAAGAGGAGAAAAGGATTTTTGCATGTTTAGAAATCAAGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159882-ZNF283:NM_181845:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTCCTCTCCCAGCCTG
R:
TGAACCTTGATTTCTAAACATGCA
Band lengths:
202-959
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)